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Topic: SingleCell or QualityControl or ExperimentHub

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Release: Release 2.13 (2013)

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78 packages on Bioconductor tagged SingleCell or QualityControl or ExperimentHub, most distinct IPs first

SingleCell, QualityControl and ExperimentHub in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202630,33728
ShortRead
FASTQ input and manipulationBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20268,12653
MSnbase
Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto		Laurent Gattosoftware9 Aug 20265,521134
DECIPHER
Tools for curating, analyzing, and manipulating biological sequencesErik Wright		Erik Wrightsoftware30 Jul 20264,88216
minfi
Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20264,041143
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
methylumi
Handle Illumina methylation dataSean Davis		Sean Davissoftware16 Aug 20262,825158
EDASeq
Exploratory Data Analysis and Normalization for RNA-SeqDavide Risso		Davide Rissosoftware28 Apr 20262,602111
lumi
BeadArray Specific Methods for Illumina Methylation and Expression MicroarraysLei Huang		Lei Huangsoftware28 Apr 20262,454165
affyPLM
Methods for fitting probe-level modelsBen Bolstad		Ben Bolstadsoftware28 Apr 20262,43022
beadarray
Quality assessment and low-level analysis for Illumina BeadArray dataMark Dunning		Mark Dunningsoftware31 Aug 20261,74065
wateRmelon
Illumina DNA methylation array normalization and metricsLeo C Schalkwyk		Leo C Schalkwyksoftware28 Apr 20261,720172
pRoloc
A unifying bioinformatics framework for spatial proteomicsLisa Breckels		Lisa Breckelssoftware28 Apr 20261,689230
GWASTools
Tools for Genome Wide Association StudiesStephanie M. Gogarten		Stephanie M. Gogartensoftware28 Apr 20261,63494
chipseq
chipseq: A package for analyzing chipseq dataBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20261,62654
MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics ExperimentsMeena Choi		Meena Choisoftware28 Apr 20261,586100
QuasR
Quantify and Annotate Short Reads in RMichael Stadler		Michael Stadlersoftware28 Apr 20261,551114
piano
Platform for integrative analysis of omics dataLeif Varemo Wigge		Leif Varemo Wiggesoftware28 Apr 20261,50994
arrayQualityMetrics
Quality metrics report for microarray data setsHugo Gruson		Hugo Grusonsoftware28 Apr 20261,312124
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,19455
qcmetrics
A Framework for Quality ControlLaurent Gatto		Laurent Gattosoftware28 Apr 20261,19020
segmentSeq
Methods for identifying small RNA loci from high-throughput sequencing dataSamuel Granjeaud		Samuel Granjeaudsoftware28 Apr 20261,17059
limmaGUI
GUI for limma Package With Two Color MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,16511
nucleR
Nucleosome positioning package for RAlba Sala		Alba Salasoftware28 Apr 20261,14576
isobar
Analysis and quantitation of isobarically tagged MSMS proteomics dataFlorian P Breitwieser		Florian P Breitwiesersoftware28 Apr 20261,14378
OLIN
Optimized local intensity-dependent normalisation of two-color microarraysMatthias Futschik		Matthias Futschiksoftware28 Apr 20261,12311
HTqPCR
Automated analysis of high-throughput qPCR dataMatthew N. McCall		Matthew N. McCallsoftware28 Apr 20261,12221
altcdfenvs
alternative CDF environments (aka probeset mappings)Laurent Gautier		Laurent Gautiersoftware28 Apr 20261,11323