qcmetrics
Bioc currentA Framework for Quality Control
Release Lineage
Entered 2.13 · Oct 15, 2013
Current · Requires R 4.6
Description
The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
15 10 exported
Complexity
2.9 avg / 7 max
Call network
15 nodes / 4 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,350
Files
32
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
11
Internal functions
5
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
20%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.3
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
26
First release
2013-10-14
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 7
- Examples that run
- 100%5 run in a plain check
- Exported functions with examples
- 67%
- Documented parameters
- 100%
- Return-value docs
- 33%
- Help pages citing references
- 14%
Repository practices
5 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/lgatto/qcmetrics on 2026-10-11.
The R CMD check workflow runs on Linux
GitHub Pages site last deployed 2024-02-03 · The repository has a site deploy workflow
Datasets
Topics
Depended on by (1)
Bioconductor (1)
People
- Laurent Gatto author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("qcmetrics")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.