pRoloc
Bioc currentA unifying bioinformatics framework for spatial proteomics
Release Lineage
Entered 2.12 · Apr 4, 2013
Current · Requires R 4.6
Description
The pRoloc package implements machine learning and visualisation methods for the analysis and interogation of quantitiative mass spectrometry data to reliably infer protein sub-cellular localisation.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
253 132 exported
Complexity
4 avg / 71 max
Call network
253 nodes / 270 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
23,742
Files
226
Compiled share
1.5%
Has compiled src
Yes
Language breakdown
API
Exported functions
144
Internal functions
110
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.09
testthat edition
–
Docs
Roxygen coverage
93.8%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
57.1%
Unsafe pattern score
0
Dep constraint coverage
10.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
27
First release
2013-08-14
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
100%
Dep drift
24
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 76 (1 internal)
- Examples that run
- 91%58 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran) · 4 never run · 1 hold no code
- Exported functions with examples
- 87%
- Documented parameters
- 100%
- Return-value docs
- 90%
- Help pages citing references
- 11%
Repository practices
8 development-tooling and community-health practices detected across 5 families in the upstream repository
Checks run against github.com/lgatto/proloc on 2026-10-22.
The R CMD check workflow runs on Linux
GitHub Pages site last deployed 2024-11-23 · The repository has a site deploy workflow
Show all practicesHide 1 practice
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| andy2011params | – | – | – |
| dunkley2006params | – | – | – |
| dunkley2006pdunittest1 | – | – | – |
| dunkley2006pdunittest2 | – | – | – |
| dunkley2006pdunittest_20140408 | – | – | – |
| marker2_atha | list | 3 elements | No other package |
| marker2_dmel | list | 3 elements | No other package |
| marker2_ggal | list | 3 elements | No other package |
| marker2_hsap | list | 3 elements | No other package |
| marker2_hsap_christopher | list | 3 elements | No other package |
| marker2_hsap_geladaki | list | 3 elements | No other package |
| marker2_hsap_itzhak | list | 3 elements | No other package |
| marker2_hsap_villaneuva | list | 3 elements | No other package |
| marker2_mmus | list | 3 elements | No other package |
| marker2_mmus_christoforou | list | 3 elements | No other package |
| marker2_scer_sgd | list | 3 elements | No other package |
| marker2_scer_uniprot | list | 3 elements | No other package |
| marker2_toxo_barylyuk | list | 3 elements | No other package |
| marker2_tryp_moloney | list | 3 elements | No other package |
| marker_atha | list | 3 elements | No other package |
| marker_dmel | list | 3 elements | No other package |
| marker_ggal | list | 3 elements | No other package |
| marker_hsap | list | 3 elements | No other package |
| marker_mmus | list | 3 elements | No other package |
| marker_scer_sgd | list | 3 elements | No other package |
| marker_scer_uniprot | list | 3 elements | No other package |
| mil | – | – | – |
| params | – | – | – |
| params2 | – | – | – |
| pdres | – | – | – |
Topics
Depended on by (2)
Suggested by (3)
People
- Lisa Breckels author maintainer
- Thomas Burger contributor
- Oliver Crook author
- Laurent Gatto author
- Charlotte Hutchings contributor
- Samuel Wieczorek contributor
Cite
Cite this package
Run in R for the authors' entry:
citation("pRoloc")The package provides a citation file, so citation() returns the authors' own entry.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.