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Topic: SingleCell or Microarray

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Release: Release 1.9 (2006)

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93 packages on Bioconductor tagged SingleCell or Microarray, most distinct IPs first

SingleCell and Microarray in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
AnnotationDbi
Manipulation of SQLite-based annotations in BioconductorBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202647,94141
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)Sean Davis		Sean Davissoftware25 Oct 202615,96073
genefilter
genefilter: methods for filtering genes from high-throughput experimentsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202615,34052
impute
impute: Imputation for microarray dataBalasubramanian Narasimhan		Balasubramanian Narasimhansoftware28 Apr 202614,5540
multtest
Resampling-based multiple hypothesis testingKatherine S. Pollard		Katherine S. Pollardsoftware28 Apr 202614,45715
affyio
Tools for parsing Affymetrix data filesBen Bolstad		Ben Bolstadsoftware28 Apr 202610,6151
affy
Methods for Affymetrix Oligonucleotide ArraysRobert D. Shear		Robert D. Shearsoftware28 Apr 202610,55611
vsn
Variance stabilization and calibration for microarray dataWolfgang Huber		Wolfgang Hubersoftware28 Apr 20267,53633
DNAcopy
DNA Copy Number Data AnalysisVenkatraman E. Seshan		Venkatraman E. Seshansoftware28 Apr 20265,0540
siggenes
Multiple Testing using SAM and Efron's Empirical Bayes ApproachesHolger Schwender		Holger Schwendersoftware28 Apr 20264,90117
oligo
Preprocessing tools for oligonucleotide arraysBenilton Carvalho		Benilton Carvalhosoftware28 Apr 20264,08752
affxparser
Affymetrix File Parsing SDKKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20263,3270
marray
Exploratory analysis for two-color spotted microarray dataYee Hwa (Jean) Yang		Yee Hwa (Jean) Yangsoftware28 Apr 20263,3117
globaltest
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set TestingJelle Goeman		Jelle Goemansoftware28 Apr 20262,84250
aroma.light
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data TypesHenrik Bengtsson		Henrik Bengtssonsoftware28 Apr 20262,4818
GOstats
Tools for manipulating GO and microarraysBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20262,43763
affyPLM
Methods for fitting probe-level modelsBen Bolstad		Ben Bolstadsoftware28 Apr 20262,43022
Mfuzz
Soft clustering of omics time series dataMatthias Futschik		Matthias Futschiksoftware28 Apr 20262,35316
gcrma
Background Adjustment Using Sequence InformationZ. Wu		Z. Wusoftware28 Apr 20262,28521
GlobalAncova
Global test for groups of variables via model comparisonsManuela Hummel		Manuela Hummelsoftware28 Apr 20262,06270
beadarray
Quality assessment and low-level analysis for Illumina BeadArray dataMark Dunning		Mark Dunningsoftware31 Aug 20261,74065
affycoretools
Functions useful for those doing repetitive analyses with Affymetrix GeneChipsJames W. MacDonald		James W. MacDonaldsoftware28 Apr 20261,459171
affycomp
Graphics Toolbox for Assessment of Affymetrix Expression MeasuresRobert D. Shear		Robert D. Shearsoftware28 Apr 20261,3397
makecdfenv
CDF Environment MakerJames W. MacDonald		James W. MacDonaldsoftware28 Apr 20261,32012
codelink
Manipulation of Codelink microarray dataDiego Diez		Diego Diezsoftware28 Apr 20261,29647
made4
Multivariate analysis of microarray data using ADE4Aedin Culhane		Aedin Culhanesoftware28 Apr 20261,27938
maSigPro
Significant Gene Expression Profile Differences in Time Course Gene Expression DataMaria Jose Nueda		Maria Jose Nuedasoftware28 Apr 20261,27212
tilingArray
Transcript mapping with high-density oligonucleotide tiling arraysZhenyu Xu		Zhenyu Xusoftware28 Apr 20261,24974
GeneMeta
MetaAnalysis for High Throughput ExperimentsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20261,23853