affycoretools
Bioc currentFunctions useful for those doing repetitive analyses with Affymetrix GeneChips
Release Lineage
Entered 1.7 · Oct 14, 2005
Current · Requires R 4.6
Description
Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
63 20 exported
Complexity
4.4 avg / 22 max
Call network
63 nodes / 29 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,059
Files
58
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
25
Internal functions
43
Recent export changes
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
14.3%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
42
First release
2005-10-12
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
95.5%
Dep drift
31
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 34 (7 internal)includes a package overview page
- Examples that run
- 38%3 run in a plain check · 5 never run
- Exported functions with examples
- 40%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
1 practice detected in the Bioconductor git repository
Topics
Depended on by (1)
Bioconductor (1)
Suggested by (1)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("affycoretools")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.