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OmopViewer

0.7.0Package record

Visualise OMOP Results using 'shiny' Applications

0packages dependsuggested by 1
3.5Kdownloads / year
71.5%test coverage
4/13flavors OK

Overview

About

Visualise results obtained from analysing data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model using 'shiny' applications.

Changes in 0.7.0

From NEWS.md in the release

Install

Health

CRAN checks
9ERROR4OK
Check messages
ERRORtestsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

r-patched-linux-x86_64, r-release-linux-x86_64

Running ‘testthat.R’ [39s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(OmopViewer)
  > 
  > test_check("OmopViewer")
  Starting 2 test processes.
  > test-appStatic.R: i Processing data
  > test-appStatic.R: ! No panels identified, generated shiny will be empty.
  > test-appStatic.R: i Creating `shiny` from provided data
  > test-background.R: i Processing data
  > test-background.R: ! No panels identified, generated shiny will be empty.
  > test-background.R: i Creating `shiny` from provided data
  > test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/Rtm
...[truncated]...
blems/test-appStatic-42.R
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
    'test-appStatic.R:46:1', 'test-appStatic.R:60:1', 'test-appStatic.R:80:3'
  • manual test (1): 'test-functions.R:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-appStatic.R:41:3'): logo ─────────────────────────────────────
  Expected `copyLogos(logo = logo, directory = tdir)` to be identical to "logo.png".
  Differences:
  `actual` is NULL
  `expected` is a character vector ('logo.png')
  
  ── Failure ('test-appStatic.R:42:3'): logo ─────────────────────────────────────
  Expected `"www/logo.png" %in% list.files(tdir, recursive = TRUE)` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  Error:
  ! Test failures.
  Execution halted

r-devel-linux-x86_64-debian-clang

Running ‘testthat.R’ [40s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(OmopViewer)
  > 
  > test_check("OmopViewer")
  Starting 2 test processes.
  > test-appStatic.R: i Processing data
  > test-appStatic.R: ! No panels identified, generated shiny will be empty.
  > test-appStatic.R: i Creating `shiny` from provided data
  > test-background.R: i Processing data
  > test-background.R: ! No panels identified, generated shiny will be empty.
  > test-background.R: i Creating `shiny` from provided data
  > test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/Rtm
...[truncated]...
blems/test-appStatic-42.R
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
    'test-appStatic.R:46:1', 'test-appStatic.R:60:1', 'test-appStatic.R:80:3'
  • manual test (1): 'test-functions.R:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-appStatic.R:41:3'): logo ─────────────────────────────────────
  Expected `copyLogos(logo = logo, directory = tdir)` to be identical to "logo.png".
  Differences:
  `actual` is NULL
  `expected` is a character vector ('logo.png')
  
  ── Failure ('test-appStatic.R:42:3'): logo ─────────────────────────────────────
  Expected `"www/logo.png" %in% list.files(tdir, recursive = TRUE)` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  Error:
  ! Test failures.
  Execution halted

r-devel-linux-x86_64-debian-gcc

Running ‘testthat.R’ [27s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(OmopViewer)
  > 
  > test_check("OmopViewer")
  Starting 2 test processes.
  > test-appStatic.R: i Processing data
  > test-appStatic.R: ! No panels identified, generated shiny will be empty.
  > test-appStatic.R: i Creating `shiny` from provided data
  > test-background.R: i Processing data
  > test-background.R: ! No panels identified, generated shiny will be empty.
  > test-background.R: i Creating `shiny` from provided data
  > test-appStatic.R: v Shiny created in: /home/hornik/tmp/scratch/Rtm
...[truncated]...
blems/test-appStatic-42.R
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
    'test-appStatic.R:46:1', 'test-appStatic.R:60:1', 'test-appStatic.R:80:3'
  • manual test (1): 'test-functions.R:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-appStatic.R:41:3'): logo ─────────────────────────────────────
  Expected `copyLogos(logo = logo, directory = tdir)` to be identical to "logo.png".
  Differences:
  `actual` is NULL
  `expected` is a character vector ('logo.png')
  
  ── Failure ('test-appStatic.R:42:3'): logo ─────────────────────────────────────
  Expected `"www/logo.png" %in% list.files(tdir, recursive = TRUE)` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  Error:
  ! Test failures.
  Execution halted

r-devel-linux-x86_64-fedora-clang

Running ‘testthat.R’ [31s/42s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(OmopViewer)
  > 
  > test_check("OmopViewer")
  Starting 2 test processes.
  > test-appStatic.R: i Processing data
  > test-appStatic.R: ! No panels identified, generated shiny will be empty.
  > test-appStatic.R: i Creating `shiny` from provided data
  > test-background.R: i Processing data
  > test-background.R: ! No panels identified, generated shiny will be empty.
  > test-background.R: i Creating `shiny` from provided data
  > test-appStatic.R: v Shiny created in: /tmp/RtmpKMhRg9/working_dir/
...[truncated]...
blems/test-appStatic-42.R
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
    'test-appStatic.R:46:1', 'test-appStatic.R:60:1', 'test-appStatic.R:80:3'
  • manual test (1): 'test-functions.R:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-appStatic.R:41:3'): logo ─────────────────────────────────────
  Expected `copyLogos(logo = logo, directory = tdir)` to be identical to "logo.png".
  Differences:
  `actual` is NULL
  `expected` is a character vector ('logo.png')
  
  ── Failure ('test-appStatic.R:42:3'): logo ─────────────────────────────────────
  Expected `"www/logo.png" %in% list.files(tdir, recursive = TRUE)` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  Error:
  ! Test failures.
  Execution halted

r-devel-linux-x86_64-fedora-gcc

Running ‘testthat.R’ [29s/39s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(OmopViewer)
  > 
  > test_check("OmopViewer")
  Starting 2 test processes.
  > test-background.R: i Processing data
  > test-background.R: ! No panels identified, generated shiny will be empty.
  > test-background.R: i Creating `shiny` from provided data
  > test-appStatic.R: i Processing data
  > test-appStatic.R: ! No panels identified, generated shiny will be empty.
  > test-appStatic.R: i Creating `shiny` from provided data
  > test-background.R: v Shiny created in: /tmp/RtmpWiGUHr/working_dir
...[truncated]...
blems/test-appStatic-42.R
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
    'test-appStatic.R:46:1', 'test-appStatic.R:60:1', 'test-appStatic.R:80:3'
  • manual test (1): 'test-functions.R:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-appStatic.R:41:3'): logo ─────────────────────────────────────
  Expected `copyLogos(logo = logo, directory = tdir)` to be identical to "logo.png".
  Differences:
  `actual` is NULL
  `expected` is a character vector ('logo.png')
  
  ── Failure ('test-appStatic.R:42:3'): logo ─────────────────────────────────────
  Expected `"www/logo.png" %in% list.files(tdir, recursive = TRUE)` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  Error:
  ! Test failures.
  Execution halted

r-devel-windows-x86_64

Running 'testthat.R' [22s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(OmopViewer)
  > 
  > test_check("OmopViewer")
  Starting 2 test processes.
  > test-background.R: i Processing data
  > test-appStatic.R: i Processing data
  > test-background.R: ! No panels identified, generated shiny will be empty.
  > test-appStatic.R: ! No panels identified, generated shiny will be empty.
  > test-background.R: i Creating `shiny` from provided data
  > test-appStatic.R: i Creating `shiny` from provided data
  > test-background.R: v Shiny created in: D:\temp\2026_10_15_10_16_52_186
...[truncated]...
blems/test-appStatic-42.R
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
    'test-appStatic.R:46:1', 'test-appStatic.R:60:1', 'test-appStatic.R:80:3'
  • manual test (1): 'test-functions.R:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-appStatic.R:41:3'): logo ─────────────────────────────────────
  Expected `copyLogos(logo = logo, directory = tdir)` to be identical to "logo.png".
  Differences:
  `actual` is NULL
  `expected` is a character vector ('logo.png')
  
  ── Failure ('test-appStatic.R:42:3'): logo ─────────────────────────────────────
  Expected `"www/logo.png" %in% list.files(tdir, recursive = TRUE)` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  Error:
  ! Test failures.
  Execution halted

r-oldrel-windows-x86_64

Running 'testthat.R' [29s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(OmopViewer)
  > 
  > test_check("OmopViewer")
  Starting 2 test processes.
  > test-appStatic.R: i Processing data
  > test-appStatic.R: ! No panels identified, generated shiny will be empty.
  > test-appStatic.R: i Creating `shiny` from provided data
  > test-background.R: i Processing data
  > test-background.R: ! No panels identified, generated shiny will be empty.
  > test-background.R: i Creating `shiny` from provided data
  > test-appStatic.R: v Shiny created in: D:\temp\2026_10_14_01_50_00_3037
...[truncated]...
blems/test-appStatic-42.R
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
    'test-appStatic.R:46:1', 'test-appStatic.R:60:1', 'test-appStatic.R:80:3'
  • manual test (1): 'test-functions.R:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-appStatic.R:41:3'): logo ─────────────────────────────────────
  Expected `copyLogos(logo = logo, directory = tdir)` to be identical to "logo.png".
  Differences:
  `actual` is NULL
  `expected` is a character vector ('logo.png')
  
  ── Failure ('test-appStatic.R:42:3'): logo ─────────────────────────────────────
  Expected `"www/logo.png" %in% list.files(tdir, recursive = TRUE)` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  Error:
  ! Test failures.
  Execution halted

r-release-windows-x86_64

Running 'testthat.R' [20s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(OmopViewer)
  > 
  > test_check("OmopViewer")
  Starting 2 test processes.
  > test-appStatic.R: i Processing data
  > test-background.R: i Processing data
  > test-appStatic.R: ! No panels identified, generated shiny will be empty.
  > test-background.R: ! No panels identified, generated shiny will be empty.
  > test-appStatic.R: i Creating `shiny` from provided data
  > test-background.R: i Creating `shiny` from provided data
  > test-background.R: v Shiny created in: D:\temp\2026_10_14_01_50_00_303
...[truncated]...
blems/test-appStatic-42.R
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
    'test-appStatic.R:46:1', 'test-appStatic.R:60:1', 'test-appStatic.R:80:3'
  • manual test (1): 'test-functions.R:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-appStatic.R:41:3'): logo ─────────────────────────────────────
  Expected `copyLogos(logo = logo, directory = tdir)` to be identical to "logo.png".
  Differences:
  `actual` is NULL
  `expected` is a character vector ('logo.png')
  
  ── Failure ('test-appStatic.R:42:3'): logo ─────────────────────────────────────
  Expected `"www/logo.png" %in% list.files(tdir, recursive = TRUE)` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 2 | WARN 17 | SKIP 6 | PASS 83 ]
  Error:
  ! Test failures.
  Execution halted

CRAN check page ↗

Slowest check: 3.6 min · r-oldrel-macos-x86_64
Status changes
  • ERROR4 OK, 9 ERRORNow
  • ERROR11 OK, 2 ERROR2026-09-26
  • OK13 OK2026-09-08
  • ERROR12 OK, 1 ERROR2026-09-07
  • OK13 OK2026-08-05
  • NOTE12 OK, 1 NOTE2026-08-01
Show 9 earlier changesHide 9 earlier changes
  • OK13 OK2026-07-04
  • ERROR12 OK, 1 ERROR2026-07-03
  • OK13 OK2026-06-29
  • ERROR11 OK, 2 ERROR2026-06-20
  • OK13 OK2026-06-09
  • ERROR12 OK, 1 ERROR2026-06-08
  • OK13 OK2026-05-02
  • ERROR11 OK, 1 ERROR2026-04-25
  • OK14 OK2026-03-10
Advisories

none known

Documentation

In release 0.7.0
READMEYes · 397 wordsVignettesYes · 3 · dynamicNEWSYes · 100% structured · mentions 0.7.0Citation fileNoWebsiteYes · pkgdown

The repository also keeps web-only articles.

Help pages
9 (1 internal)includes a package overview page
Examples that run
80%4 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples
83%
Documented parameters
100%
Return-value docs
100%
Help pages citing references
0%

Downloads

3.5K
CRAN downloads in the past year
Rank #12,923 · ~10/day · ~295/mo
Daily download trend is not available in this view yet.
36030 days
85690 days
3.5K1 year
Compare downloads with other packages →
Also on113 r2u10 autocran

Repository

3Stars
2Forks
26Open issues
3Open PRs
6Releases
852Commits
11Commit identities
License file reads as Apache-2.0 · 852 commits · Last activity 2026-10-01 · 0% stars, 30d
Responsiveness
How these are sampled
PRs merged (all time)
95%
Median days to close, 50 most recently updated closed issues
46
Median days to close, 50 most recently updated closed PRs
1

Stars over time

2025-02-07 · 22026-07-07 · 3
PracticesBeta

11 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/ohdsi/omopviewer on 2026-10-11.

Continuous integration (2)
GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux

Docs source (4)
README.Rmdpkgdown

GitHub Pages site last deployed 2026-10-01 · The repository has a site deploy workflow

pkgdown site last built 2026-10-01

Coverage (1)
Coverage reporting (Codecov)
Reproducibility and dev environment (1)
data-raw/
Show all practicesHide 2 practices
CRAN release process (2)
cran-comments.mdCRAN-SUBMISSION
Lint, format, editor (1)
RStudio project
How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Reverse dependencies
0direct
0indirect
Suggested by 1
Suggests, most downloaded first

Datasets

People & History

People (6)
Author, Maintainer since 0.1.0 (2024)
Author
Contributor
Contributor
Contributor
Releases (7)

Pick two releases to compare their code metrics.

  • R
    R 4.6.0 released · 2026-04-24
  • 0.7.0Latest
    record
    2026-02-09 · current release · diff ↗
  • 0.6.0
    record
    2025-12-10 · diff ↗
  • 0.5.0
    record
    2025-11-16 · diff ↗ ·
    added 1 export
    omopViewerThemes
  • 0.4.0
    record
    2025-07-09 · diff ↗
  • 0.3.0
    record
    2025-04-15 · diff ↗ ·
    added 3 exports
    defaultPanels, getPanel, panelDetailsFromResult
  • R
    R 4.5.0 released · 2025-04-11
  • unarchivedReturned to CRAN
    2024-11-28
  • 0.2.0
    record
    2024-11-28 · diff ↗ ·
    removed 10 exports
    cardFromMd, cardSummary, correctSettings, emptySummarisedResult, exportSummarisedResult, filterData, getChoices, importSummarisedResult, omopViewerTable, tidyData
  • archivedRemoved from CRAN
    2024-11-13
    issues were not corrected in time
  • 0.1.0
    record
    2024-10-21
  • R
    R 4.4.0 released · 2024-04-24

Package metadata

First published
2024-10-21
Total releases
7 / 2 yrs
License
Apache License (>= 2)
Minimum R
≥ 4.1
Bundled data
300 KB / 2 files
Download size
421 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("OmopViewer")
Català, M., Burn, E., Campanile, C., Guo, Y., Mercade-Besora, N., & Rowlands, E. (2026). OmopViewer: Visualise OMOP Results using 'shiny' Applications (Version 0.7.0) [Computer software]. https://doi.org/10.32614/CRAN.package.OmopViewer

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for OmopViewer version 0.7.0 [Data set]. HJJB, LLC. Data release v2026-10-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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