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OmopViewer

Visualise OMOP Results using 'shiny' Applications

v0.7.0 · Feb 9, 2026 · Apache License (>= 2)

Description

Visualise results obtained from analysing data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model using 'shiny' applications.

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CRAN Check Status

1 ERROR
12 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc ERROR
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (1 non-OK)
ERROR r-devel-linux-x86_64-fedora-gcc

tests

Running ‘testthat.R’ [62s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(OmopViewer)
  > 
  > test_check("OmopViewer")
  Starting 2 test processes.
  > test-appStatic.R: i Processing data
  > test-appStatic.R: ! No panels identified, generated shiny will be empty.
  > test-appStatic.R: i Creating `shiny` from provided data
  > test-background.R: i Processing data
  > test-background.R: ! No panels identified, generated shiny will be empty.
  > test-background.R: i Creating `shiny` from provided data
  > test-appStatic.R: v Shiny created in: /tmp/Rtmpfb4Clj/working_dir/
...[truncated]...
tic.R:46:1',
    'test-appStatic.R:60:1', 'test-appStatic.R:80:3'
  • manual test (1): 'test-functions.R:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-appStatic.R:41:3'): logo ───────────────────────────────────────
  Error in `utils::download.file(url = url, destfile = tf, mode = "wb")`: cannot open URL 'https://www.ema.europa.eu/sites/default/files/styles/oe_bootstrap_theme_medium_no_crop/public/2024-07/DARWINEU_logo_LARGE.png?itok=NtwlLhSX'
  Backtrace:
      ▆
   1. ├─testthat::expect_identical(...) at test-appStatic.R:41:3
   2. │ └─testthat::quasi_label(enquo(object), label)
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─OmopViewer:::copyLogos(logo = logo, directory = tdir)
   5.   └─OmopViewer:::downloadLogo(url = logo, directory = directory)
   6.     └─utils::download.file(url = url, destfile = tf, mode = "wb")
  
  [ FAIL 1 | WARN 17 | SKIP 5 | PASS 83 ]
  Error:
  ! Test failures.
  Execution halted

Check History

ERROR 11 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Jun 20, 2026
ERROR r-devel-linux-x86_64-fedora-clang

tests

Running ‘testthat.R’ [65s/68s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional 
...[truncated]...
rectory = tdir)
   5.   └─OmopViewer:::downloadLogo(url = logo, directory = directory)
   6.     └─utils::download.file(url = url, destfile = tf, mode = "wb")
  
  [ FAIL 1 | WARN 17 | SKIP 5 | PASS 83 ]
  Error:
  ! Test failures.
  Execution halted
ERROR r-devel-linux-x86_64-fedora-gcc

tests

Running ‘testthat.R’ [66s/68s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional 
...[truncated]...
rectory = tdir)
   5.   └─OmopViewer:::downloadLogo(url = logo, directory = directory)
   6.     └─utils::download.file(url = url, destfile = tf, mode = "wb")
  
  [ FAIL 1 | WARN 17 | SKIP 5 | PASS 83 ]
  Error:
  ! Test failures.
  Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR r-devel-linux-x86_64-debian-gcc

package dependencies

Packages required but not available: 'omopgenerics', 'visOmopResults'

Packages suggested but not available for checking:
  'CDMConnector', 'CodelistGenerator', 'CohortCharacteristics',
  'CohortConstructor', 'CohortSurvival', 'DiagrammeR',
  'DrugUtilisation', 'IncidencePrevalence', 'MeasurementDiagnostics',
  'omock', 'OmopSketch', 'PatientProfiles', 'plotly', 'shiny.fluent'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 2, 2026
ERROR 11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 25, 2026
ERROR r-release-macos-x86_64

package dependencies

Package required and available but unsuitable version: ‘visOmopResults’

Packages suggested but not available for checking:
  'CodelistGenerator', 'CohortCharacteristics', 'CohortConstructor',
  'CohortSurvival', 'DrugUtilisation', 'IncidencePrevalence',
  'MeasurementDiagnostics', 'OmopSketch', 'PatientProfiles'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (1)

suggests

Dependency Network

Dependencies Reverse dependencies bslib cli dplyr DT glue gt lifecycle markdown omopgenerics purrr rlang shiny snakecase stringr styler +4 more dependencies OmopSketch OmopViewer

Version History

8 tracked
new 0.7.0 Mar 10, 2026
updated 0.7.0 ← 0.6.0 diff Feb 8, 2026
updated 0.6.0 ← 0.5.0 diff Dec 9, 2025
updated 0.5.0 ← 0.4.0 diff Nov 15, 2025
updated 0.4.0 ← 0.3.0 diff Jul 8, 2025
updated 0.3.0 ← 0.2.0 diff Apr 14, 2025
updated 0.2.0 ← 0.1.0 diff Nov 27, 2024
new 0.1.0 Oct 20, 2024