OmopViewer
Visualise OMOP Results using 'shiny' Applications
v0.7.0
·
Feb 9, 2026
·
Apache License (>= 2)
Description
Visualise results obtained from analysing data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model using 'shiny' applications.
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CRAN Check Status
1
ERROR
12
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | ERROR |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
ERROR
r-devel-linux-x86_64-fedora-gcc
tests
Running ‘testthat.R’ [62s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(OmopViewer)
>
> test_check("OmopViewer")
Starting 2 test processes.
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/Rtmpfb4Clj/working_dir/
...[truncated]...
tic.R:46:1',
'test-appStatic.R:60:1', 'test-appStatic.R:80:3'
• manual test (1): 'test-functions.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-appStatic.R:41:3'): logo ───────────────────────────────────────
Error in `utils::download.file(url = url, destfile = tf, mode = "wb")`: cannot open URL 'https://www.ema.europa.eu/sites/default/files/styles/oe_bootstrap_theme_medium_no_crop/public/2024-07/DARWINEU_logo_LARGE.png?itok=NtwlLhSX'
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-appStatic.R:41:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─OmopViewer:::copyLogos(logo = logo, directory = tdir)
5. └─OmopViewer:::downloadLogo(url = logo, directory = directory)
6. └─utils::download.file(url = url, destfile = tf, mode = "wb")
[ FAIL 1 | WARN 17 | SKIP 5 | PASS 83 ]
Error:
! Test failures.
Execution halted
Check History
ERROR 11 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Jun 20, 2026
ERROR
r-devel-linux-x86_64-fedora-clang
tests
Running ‘testthat.R’ [65s/68s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional ...[truncated]... rectory = tdir) 5. └─OmopViewer:::downloadLogo(url = logo, directory = directory) 6. └─utils::download.file(url = url, destfile = tf, mode = "wb") [ FAIL 1 | WARN 17 | SKIP 5 | PASS 83 ] Error: ! Test failures. Execution halted
ERROR
r-devel-linux-x86_64-fedora-gcc
tests
Running ‘testthat.R’ [66s/68s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional ...[truncated]... rectory = tdir) 5. └─OmopViewer:::downloadLogo(url = logo, directory = directory) 6. └─utils::download.file(url = url, destfile = tf, mode = "wb") [ FAIL 1 | WARN 17 | SKIP 5 | PASS 83 ] Error: ! Test failures. Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
package dependencies
Packages required but not available: 'omopgenerics', 'visOmopResults' Packages suggested but not available for checking: 'CDMConnector', 'CodelistGenerator', 'CohortCharacteristics', 'CohortConstructor', 'CohortSurvival', 'DiagrammeR', 'DrugUtilisation', 'IncidencePrevalence', 'MeasurementDiagnostics', 'omock', 'OmopSketch', 'PatientProfiles', 'plotly', 'shiny.fluent' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 2, 2026
ERROR 11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 25, 2026
ERROR
r-release-macos-x86_64
package dependencies
Package required and available but unsuitable version: ‘visOmopResults’ Packages suggested but not available for checking: 'CodelistGenerator', 'CohortCharacteristics', 'CohortConstructor', 'CohortSurvival', 'DrugUtilisation', 'IncidencePrevalence', 'MeasurementDiagnostics', 'OmopSketch', 'PatientProfiles' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.