R Observatory: Metrics for umap version 0.2.10.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

umap

0.2.10.0Package record

Uniform Manifold Approximation and Projection

23packages dependsuggested by 19

156.4Kdownloads / year

89.2%test coverage

11/13flavors OK

Overview

About

Maintained by Tomasz KonopkaCRAN page ↗GitHub ↗Issues ↗

Uniform manifold approximation and projection is a technique for dimension reduction. The algorithm was described by McInnes and Healy (2018) in arXiv:1802.03426. This package provides an interface for two implementations. One is written from scratch, including components for nearest-neighbor search and for embedding. The second implementation is a wrapper for 'python' package 'umap-learn' (requires separate installation, see vignette for more details).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("umap", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("tkonopka/umap")

Development version from tkonopka/umap. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-umap

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-umap

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-umap

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Tomasz Konopka <tokonopka@gmail.com>’

The Description field contains
  (2018) in <arXiv:1802.03426>. This package provides an interface for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

CRAN check page ↗

Slowest check: 4.3 min · r-devel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-06-08
ERROR11 OK, 1 NOTE, 1 ERROR2026-06-07
NOTE11 OK, 2 NOTE2026-05-09
ERROR10 OK, 2 NOTE, 1 ERROR2026-05-05
NOTE12 OK, 2 NOTE2026-04-22

Show 2 earlier changesHide 2 earlier changes

ERROR11 OK, 2 NOTE, 1 ERROR2026-04-18
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.10.0

README· In the repository, left out of the releaseVignettesYes · 2 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 4
Examples that run: 100%4 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 67%
Help pages citing references: 0%

Vignettes (2)

How these are measured

Downloads

156.4K

CRAN downloads in the past year

Rank #1,017 · ~428/day · ~13K/mo

Releases R versions

Daily download trend is not available in this view yet.

12.5K30 days

38.6K90 days

156.4K1 year

Compare downloads with other packages →

Also on3.5K r2u4 autocran12.5K conda_forge176 c2d4u

How downloads are counted

Repository

tkonopka/umap ↗Account: tkonopka

135Stars

17Forks

6Open issues

0Open PRs

10Releases

102Commits

3Commit identities

dimensionality-reductionumap

102 commits · Last activity 2024-04-29 · 0% stars, 30d · Default branch at 0.2.11.0, ahead of CRAN 0.2.10.0 (checked 2026-10-11)

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 5
Median days to close, 50 most recently updated closed PRs: 2

Stars over time

2025-09-12 · 1352026-08-06 · 135

How these are measured

PracticesBeta

2 development-tooling and community-health practices detected across 1 family in the upstream repository

Checks run against github.com/tkonopka/umap on 2026-10-11.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing umap adds 15 packages (12 with compiled code, 8.4 MB of source tarballs). Heaviest: Rcpp 1.8 MB, RcppEigen 1.7 MB, reticulate 1.6 MB.

Depends (1)

R >= 3.6.0

Imports (7)

Matrixmethodsopenssl reticulate Rcpp RSpectrastats

LinkingTo (1)

Rcpp

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

23direct

6indirect

Depends 1 · Imports 22

Suggested by 19

Show all 42 packagesHide all 42 packages

Depends, Imports or LinkingTo, most downloaded first

Mercator jrSiCKLSNMF AbSolution SuperCell tall RaceID ggsem EmbedSOM KODAMA RSDA HVT FateID STATassist musclesyneRgies karyotapR chameleon theftdlc ggpca nevada polarisR mectx emcAdr SaturnCoefficient

Suggests, most downloaded first

factoextra seriation dimRed OlinkAnalyze ProjectionBasedClustering MiscMetabar UCSCXenaShiny topolow TextAnalysisR finlabR NGCHM qeML pctax tmfast OlinkAnalyzeVignettes crosshap OTclust tidymatrix treehunt

How these are counted

Code & Tests

People & History

People (1)

Tomasz Konopka

Author, Maintainer since 0.1.0.3 (2018)

Releases (14)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.2.10.0Latest
record
2023-02-01 · current release · diff ↗
0.2.9.0
record
2022-08-25 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.2.8.0
record
2022-03-23 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.2.7.0
record
2020-11-04 · diff ↗ ·
added 1 export
umap.knn
0.2.6.0
record
2020-06-16 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.2.5.0
record
2020-03-09 · diff ↗
0.2.4.1
record
2020-01-09 · diff ↗
0.2.4.0
record
2019-12-07 · diff ↗
0.2.3.1
record
2019-08-21 · diff ↗

Show 7 earlier eventsHide 7 earlier events

0.2.3
record
2019-08-19 · diff ↗
0.2.2.0
record
2019-05-13 · diff ↗
0.2.1.0
record
2019-04-30 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.2.0.0
record
2018-07-25 · diff ↗
0.1.0.3
record
2018-06-24
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-06-24
Total releases: 14 / 8 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.6.0
Download size: 81 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("umap")

Format

Konopka, T. (2023). umap: Uniform Manifold Approximation and Projection (Version 0.2.10.0) [Computer software]. https://doi.org/10.32614/CRAN.package.umap

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for umap version 0.2.10.0 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →