R Observatory: Metrics for ComplexUpset version 1.3.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ComplexUpset

1.3.3Package record

Create Complex UpSet Plots Using 'ggplot2' Components

2packages dependsuggested by 3

68.3Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Michał KrassowskiCRAN page ↗GitHub ↗Website ↗Issues ↗

UpSet plots are an improvement over Venn Diagram for set overlap visualizations. Striving to bring the best of the 'UpSetR' and 'ggplot2', this package offers a way to create complex overlap visualisations, using simple and familiar tools, i.e. geoms of 'ggplot2'. For introduction to UpSet concept, see Lex et al. (2014) doi:10.1109/TVCG.2014.2346248.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ComplexUpset", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("krassowski/complex-upset")

Development version from krassowski/complex-upset. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-complexupset

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ComplexUpset

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ComplexUpset

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Michał Krassowski <krassowski.michal+r@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

CRAN check page ↗

Slowest check: 2.2 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.3

READMEYes · 568 wordsVignettesYes · 1 · staticNEWSNoCitation fileYes · cites a publicationWebsiteYes · pkgdown

Help pages: 27
Examples that run: 100%2 run in a plain check
Exported functions with examples: 7%
Documented parameters: 95%
Return-value docs: 0%
Help pages citing references: 0%

Vignettes (1)

Examples - R

How these are measured

Downloads

68.3K

CRAN downloads in the past year

Rank #1,528 · ~187/day · ~5.7K/mo

Releases R versions

Daily download trend is not available in this view yet.

4.9K30 days

15.8K90 days

68.3K1 year

Compare downloads with other packages →

Also on903 r2u10 autocran4.9K conda_forge

How downloads are counted

Repository

krassowski/complex-upset ↗Account: krassowski

572Stars

41Forks

70Open issues

7Open PRs

21Releases

354Commits

5Commit identities

ggplot2upsetrupsetpatchworkvenn-diagramggplotvisualizationrstats

License file reads as MIT · 354 commits · Last activity 2025-09-23 · +0.2% stars, 30d · Default branch at 1.3.6, ahead of CRAN 1.3.3 (checked 2026-10-18)

Responsiveness

How these are sampled

PRs merged (all time): 92%
Median days to close, 50 most recently updated closed issues: 2
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2026-07-14 · 5692026-10-13 · 572

How these are measured

PracticesBeta

7 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/krassowski/complex-upset on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

Governance and community (2)

Issue templates

The repository owner accepts GitHub Sponsors

Docs source (2)

pkgdown

GitHub Pages site last deployed 2022-11-11

Coverage (1)

Coverage reporting

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Installing ComplexUpset adds 19 packages (8 with compiled code, 19 MB of source tarballs). Heaviest: ggplot2 6.0 MB, patchwork 3.2 MB, colorspace 2.0 MB.

Depends (0)

none

Imports (4)

ggplot2 patchwork scales colorspace

LinkingTo (0)

none

Suggests (9)

testthat knitr rmarkdown covr tibble ggplot2movies vdiffr jsonlite data.table

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

1indirect

Imports 2

Suggested by 3

Depends, Imports or LinkingTo, most downloaded first

vennDiagramLab SurrogateRank

Suggests, most downloaded first

genekitr MiscMetabar BCGcalc

How these are counted

Code & Tests

People & History

People (1)

Michał Krassowski

Author, Maintainer since 0.7.3 (2020)

Releases (8)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.3.3Latest
record
2021-12-11 · current release · diff ↗
1.3.1
record
2021-08-05 · diff ↗
1.3.0
record
2021-06-06 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.2.1
record
2021-04-29 · diff ↗
1.2.0
record
2021-04-04 · diff ↗ ·
added 1 export
upset_stripes
1.1.0
record
2021-02-26 · diff ↗
1.0.3
record
2021-01-10 · diff ↗ ·
added 11 exports
arrange_venn, create_upset_abc_example, geom_venn_circle, geom_venn_label_region, geom_venn_label_set, geom_venn_region, get_size_mode, intersection_matrix, scale_color_venn_mix, scale_fill_venn_mix, upset_mode
0.7.3
record
2020-12-08
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-12-08
Total releases: 8 / 6 yrs
License: MIT + file LICENSE OSI
Download size: 4.6 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("ComplexUpset")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.5281/zenodo.3700590, 10.1109/tvcg.2014.2346248.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ComplexUpset version 1.3.3 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →