Bioconductor Topics

A subset of arrays from a large acute lymphoblastic leukemia (ALL) study

Example dataset for normalization of Illumina 450k Methylation data

Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF, PSI) for Testing

Example of Amplified Data

Analysing Illumina BeadArray expression data using Bioconductor

Illumina EPIC data on BeadSorted child saliva cells

Carbon Tetrachloride (CCl4) treated hepatocytes

Hub package for the precomputed data of CENTRE and example data

A Package for CLL Gene Expression Data

Annotations for City of Hope CpG Island Analysis Pipeline

Pre-processed data for use with the CellMapper package

Chimp and human brain data package

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

DNA methylation-based machine learning models

Data package for DExMA package

Diffuse large B-cell lymphoma expression data

Data Package for DMRcate

Example DNAm Data for DMRsegal

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Drug versus Disease Data

EpipwR.data: Reference data for EpipwR

Download datasets from EMBL-EBI Expression Atlas

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Illumina HumanMethylation data on sorted blood cell populations

Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells

Illumina 450k data on sorted cord blood cells

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Illumina HumanMethylation data on sorted cord blood cell populations

Illumina HumanMethylation data on sorted frontal cortex cell populations

Gene Set Benchmark

Placental cell DNA methylation data from GEO accession GSE159526

Data used in the examples and vignettes of the GWASTools package

T cell line infections with HIV-1 LAI (BRU)

Data for the Harman package

HiBED

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes

Illumina microarray files (IDAT) for testing

KEGG Disease Datasets from GEO

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.

Experimental Data Package: MAQCsubset

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

MethylAid-summarized data for 2800 Illumina 450k array samples and 2620 EPIC array samples

expression and copy number data on clear cell renal carcinoma samples

Gender data for the RUVnormalize package

Supporting datasets for SBGNview package