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Release: Showing tree for 3.23

AnnotationData(938)

ChipManufacturer(404)

AffymetrixChip(342)

AgilentChip(17)

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IlluminaChip(29)

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ag(3)

hs25kresogen(1)

illuminaHumanv1(1)

illuminaHumanv2(1)

illuminaMousev1(1)

illuminaMousev1p1(1)

illuminaRatv1(1)

mm24kresogen(1)

pedbarrayv10(1)

xenopuslaevis(2)

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MassSpectrometry(154)

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Microarray(399)

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MethylationArray(46)

MicroRNAArray(5)

MultiChannel(7)

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TissueMicroarray(2)

mRNAMicroarray(24)

MicrotitrePlateAssay(14)

Sequencing(938)

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HiC(36)

MicrobialStrain(1)

PooledScreens(6)

TargetedResequencing(6)

WholeGenome(40)

SingleCell(346)

qPCR(13)

WorkflowManagement(1)

WorkflowStep(1,321)

MultipleSequenceAlignment(19)

Annotation(152)

BatchEffect(76)

ExperimentalDesign(34)

GenomeBrowsers(2)

MultipleComparison(184)

Normalization(188)

GO(76)

KEGG(55)

NCINatureCurated(0)

Preprocessing(276)

QualityControl(245)

ReportWriting(39)

Visualization(614)

AnnotationWorkflow(4)

BasicWorkflow(5)

DifferentialSplicingWorkflow(0)

EpigeneticsWorkflow(6)

GeneExpressionWorkflow(13)

GenomicVariantsWorkflow(0)

ImmunoOncologyWorkflow(20)

ProteomicsWorkflow(1)

ResourceQueryingWorkflow(2)

SingleCellWorkflow(10)

SpatialWorkflow(1)

SpatialData

13 packages

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Package	Category	Version	Status
HCATonsilDataBioc Provide programmatic access to the tonsil cell atlas datasets	experiment	1.10.0	current
MerfishDataBioc Collection of public MERFISH datasets	experiment	1.14.1	current
SFEDataBioc Example SpatialFeatureExperiment datasets	experiment	1.14.0	current
STexampleDataBioc Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format	experiment	1.20.0	current
SpatialDatasetsBioc Collection of spatial omics datasets	experiment	1.10.0	current
SubcellularSpatialDataBioc Annotated spatial transcriptomics datasets from 10x Xenium, NanoString CosMx and BGI STOmics.	experiment	1.8.0	current
TENxXeniumDataBioc Collection of Xenium spatial data by 10X genomics	experiment	1.8.0	current
VectraPolarisDataBioc Vectra Polaris and Vectra 3 multiplex single-cell imaging data	experiment	1.16.0	current
WeberDivechaLCdataBioc Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples	experiment	1.14.0	current
humanHippocampus2024Bioc Access to SRT and snRNA-seq data from spatial_HPC project	experiment	1.4.0	current
imcdatasetsBioc Collection of publicly available imaging mass cytometry (IMC) datasets	experiment	1.20.0	current
muSpaDataBioc Multi-sample multi-group spatially resolved transcriptomic data	experiment	1.4.0	current
spatialLIBDBioc spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data	experiment	1.24.0	current