DeSousa2013
Bioc currentPoor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion
Release Lineage
Entered 2.13 · Oct 15, 2013
Current · Requires R 4.6
Description
This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
18 17 exported
Complexity
1.6 avg / 3 max
Call network
18 nodes / 17 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,315
Files
40
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
17
Internal functions
1
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.15
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
26
First release
2013-12-13
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 85%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 100%
Topics
People
Xin Wang
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("DeSousa2013")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.