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scTreeViz

Bioc current

R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations

v1.18.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.14 · Oct 27, 2021

Current · Requires R 4.6

1.0 In 10 of 49 releases 3.23

Description

scTreeViz provides classes to support interactive data aggregation and visualization of single cell RNA-seq datasets with hierarchies for e.g. cell clusters at different resolutions. The `TreeIndex` class provides methods to manage hierarchy and split the tree at a given resolution or across resolutions. The `TreeViz` class extends `SummarizedExperiment` and can performs quick aggregations on the count matrix defined by clusters.

Code

Code metrics have not been computed for this package yet.

Topics

Software › WorkflowStep › Visualization
Software › Infrastructure
Software › Infrastructure › GUI
Software › Technology › SingleCell

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