SC3
Bioc currentSingle-Cell Consensus Clustering
Release Lineage
Entered 3.3 · May 4, 2016
Current · Requires R 4.6
Description
A tool for unsupervised clustering and analysis of single cell RNA-Seq data.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
51 7 exported
Complexity
4.2 avg / 23 max
Call network
51 nodes / 48 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,108
Files
61
Compiled share
4.4%
Has compiled src
Yes
Language breakdown
API
Exported functions
24
Internal functions
33
Recent export changes
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
9.1%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.3
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
21
First release
2016-05-15
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
11
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 41
- Examples that run
- 100%4 run in a plain check
- Exported functions with examples
- 17%
- Documented parameters
- 100%
- Return-value docs
- 58%
- Help pages citing references
- 0%
- SC3 package manual HTML
Repository practices
2 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/hemberg-lab/sc3 on 2026-10-18.
GitHub Pages site last deployed 2019-12-17
Datasets
Topics
Depended on by (2)
Suggested by (4)
People
- Vladimir Kiselev maintainer author
- Tallulah Andrews contributor
- Martin Hemberg author
- Andrew Yiu contributor
Cite
Cite this package
Run in R for the authors' entry:
citation("SC3")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1038/nmeth.4236.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.