qpgraph
Bioc currentEstimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics Data
Release Lineage
Entered 2.4 · Apr 21, 2009
Current · Requires R 4.6
Description
Estimate gene and eQTL networks from high-throughput expression and genotyping assays.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
228 29 exported
Complexity
12.7 avg / 200 max
Call network
228 nodes / 310 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
29,650
Files
98
Compiled share
39%
Has compiled src
Yes
Language breakdown
API
Exported functions
31
Internal functions
70
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
11.8%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
35
First release
2009-04-20
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
20
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 44includes a package overview page
- Examples that run
- 91%30 run in a plain check · 3 never run
- Exported functions with examples
- 86%
- Documented parameters
- 99%
- Return-value docs
- 89%
- Help pages citing references
- 70%
Repository practices
3 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/rcastelo/qpgraph on 2026-10-18.
The R CMD check workflow runs on Linux
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| filtered.regulon6.1 | data.frame | 3,283 × 5 | No other package |
| gds680.eset | – | – | – |
| subset.filtered.regulon6.1 | data.frame | 681 × 5 | No other package |
| subset.gds680.eset | – | – | – |
Topics
Depended on by (3)
CRAN (1)
People
- Robert Castelo author maintainer
- Alberto Roverato author
Cite
Cite this package
Run in R for the authors' entry:
citation("qpgraph")The package provides a citation file, so citation() returns the authors' own entry.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.