filtered.regulon6.1
Preprocessed microarray oxygen deprivation data and filtered RegulonDB data
Bundled with qpgraph · exported, loads via data()
Class
data.frame
Dimensions
3,283 × 5
Missing
0
Format
rda · xz
version 2 · 1.2 MB
File
data/EcoliOxygen.RData
Fingerprint
dcb00f3e
Format documented
Yes
Source
Covert, M.W., Knight, E.M., Reed, J.L., Herrgard, M.J., and Palsson, B.O. Integrating high-throughput and computational data elucidates bacterial networks. *Nature*, 429(6987):92-96, 2004. Gama-Castro, S., Jimenez-Jacinto, V., Peralta-Gil, M., Santos-Zavaleta, A., Penaloza-Spinola, M.I., Contreras-Moreira, B., Segura-Salazar, J., Muniz-Rascado, L., Martinez-Flores, I., Salgado, H., Bonavides-Martinez, C., Abreu-Goodger, C., Rodriguez-Penagos, C., Miranda-Rios, J., Morett, E., Merino, E., Huerta, A.M., Trevino-Quintanilla, L., and Collado-Vides, J. RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. *Nucleic Acids Res.*, 36(Database issue):D120-124, 2008.
About this object
Equal-length columns presented as a table, R's standard rectangular format. R object catalogue
Declared attributes
Row names
Yes
Columns
Same structure in 1 other dataset
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.22 | 2025-10-29 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.21 | 2025-04-15 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.20 | 2025-02-01 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.19 | 2024-04-30 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.18 | 2023-10-24 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.17 | 2023-05-01 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.16 | 2023-01-19 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.15 | 2022-09-19 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.14 | 2022-04-05 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.13 | 2021-05-19 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.12 | 2021-01-08 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.11 | 2020-04-27 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.10 | 2019-10-29 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.9 | 2019-05-02 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.8 | 2018-10-30 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.7 | 2018-04-30 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.6 | 2017-10-30 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.5 | 2017-09-01 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.4 | 2017-01-25 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.3 | 2016-05-17 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.2 | 2016-03-15 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.1 | 2015-06-10 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 3.0 | 2014-12-22 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 2.14 | 2014-08-02 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 2.13 | 2014-02-25 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 2.12 | 2013-07-24 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 2.11 | 2013-03-07 | 3,283 × 5 | Unchanged | rda · xz version 2 · 1.2 MB | exact |
| 2.10 | 2012-05-29 | 3,283 × 5 | Repackaged | rda · xz version 2 · 1.2 MB | exact |
| 2.9 | 2011-12-15 | 3,283 × 5 | Unchanged | rda · gzip version 2 · 1.4 MB | exact |
| 2.8 | 2011-10-06 | 3,283 × 5 | Unchanged | rda · gzip version 2 · 1.4 MB | exact |
| 2.7 | 2010-11-12 | 3,283 × 5 | Data changed Dimensions, Class and Missing unchanged | rda · gzip version 2 · 1.4 MB | exact |
| 2.6 | 2010-05-03 | 3,283 × 5 | Unchanged | rda · gzip version 2 · 1.4 MB | exact |
| 2.5 | 2009-10-27 | 3,283 × 5 | Unchanged | rda · gzip version 2 · 1.4 MB | exact |
| 2.4 | 2009-04-20 | 3,283 × 5 | – | rda · gzip version 2 · 1.4 MB | exact |
Dimensions is the row and column count. Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Missing is how many values were recorded as absent.