palmtree
Bioc removedR/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations
Release Lineage
Release history unavailable.
Description
Palmtree provides classes to support interactive data aggregation and visualization of single cell RNA-seq datasets with hierarchies for e.g. cell clusters at different resolutions. The `TreeIndex` class provides methods to manage hierarchy and split the tree at a given resolution or across resolutions. The `TreeViz` class extends `SummarizedExperiment` and can performs quick aggregations on the count matrix defined by clusters.
None published for Bioconductor
Call graph
Open call graph →Code intelligence has not been computed for this package yet.
Code
Code metrics have not been computed for this package yet.
Topics
Available on
People
- Jayaram Kancherla author maintainer
- Hector Corrada Bravo author
- Stephanie Hicks author
- Kazi Tasnim Zinat author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("palmtree")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.