DropletTestFiles
Bioc currentTest Files for Single-Cell Droplet Utilities
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
Assorted files generated from droplet-based single-cell protocols, to be used for testing functions in DropletUtils. Primarily intended for storing files that directly come out of processing pipelines like 10X Genomics' CellRanger software, prior to the formation of a SingleCellExperiment object. Unlike other packages, this is not designed to provide objects that are immediately ready for analysis.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
3 2 exported
Complexity
3.3 avg / 5 max
Call network
3 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
417
Files
24
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
1
Testing
Has tests
Yes
Test-to-code ratio
0.21
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2020-10-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 2
- Examples that run
- 100%1 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 50%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| metadata-bach-mammary-swapping | data.frame | 24 × 15 | No other package |
| metadata-tenx-2.0.1-nuclei_900 | data.frame | 5 × 15 | No other package |
| metadata-tenx-2.1.0-pbmc4k | data.frame | 4 × 15 | No other package |
| metadata-tenx-3.0.0-pbmc_10k_protein_v3 | data.frame | 5 × 15 | No other package |
| metadata-tenx-3.1.0-5k_pbmc_protein_v3 | data.frame | 5 × 15 | No other package |
| metadata-tenx-4.0.0-SC3_v3_NextGem_DI_Neuron_10K | data.frame | 5 × 15 | No other package |
| metadata-tenx-atac-1.2.0-atac_pbmc_1k_nextgem | data.frame | 4 × 15 | No other package |
Topics
Depended on by (4)
Bioconductor (4)
Suggested by (2)
People
- Aaron Lun contributor maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("DropletTestFiles")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.