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Topic: Microarray

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Release: Release 3.7 (2018)

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426 packages on Bioconductor, most distinct IPs first

Microarray in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
AnnotationDbi
Manipulation of SQLite-based annotations in BioconductorBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202647,94141
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)Sean Davis		Sean Davissoftware25 Oct 202615,96073
genefilter
genefilter: methods for filtering genes from high-throughput experimentsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202615,34052
impute
impute: Imputation for microarray dataBalasubramanian Narasimhan		Balasubramanian Narasimhansoftware28 Apr 202614,5540
multtest
Resampling-based multiple hypothesis testingKatherine S. Pollard		Katherine S. Pollardsoftware28 Apr 202614,45715
GSVA
Gene Set Variation Analysis for Microarray and RNA-Seq DataRobert Castelo		Robert Castelosoftware25 Oct 202612,75897
sva
Surrogate Variable AnalysisJeffrey T. Leek		Jeffrey T. Leeksoftware5 May 202610,80468
affyio
Tools for parsing Affymetrix data filesBen Bolstad		Ben Bolstadsoftware28 Apr 202610,6151
affy
Methods for Affymetrix Oligonucleotide ArraysRobert D. Shear		Robert D. Shearsoftware28 Apr 202610,55611
vsn
Variance stabilization and calibration for microarray dataWolfgang Huber		Wolfgang Hubersoftware28 Apr 20267,53633
TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC dataTiago Chedraoui Silva		Tiago Chedraoui Silvasoftware28 Apr 20266,750103
pathview
a tool set for pathway based data integration and visualizationWeijun Luo		Weijun Luosoftware28 Apr 20265,70650
DNAcopy
DNA Copy Number Data AnalysisVenkatraman E. Seshan		Venkatraman E. Seshansoftware28 Apr 20265,0540
siggenes
Multiple Testing using SAM and Efron's Empirical Bayes ApproachesHolger Schwender		Holger Schwendersoftware28 Apr 20264,90117
DECIPHER
Tools for curating, analyzing, and manipulating biological sequencesErik Wright		Erik Wrightsoftware30 Jul 20264,88216
Gviz
Plotting data and annotation information along genomic coordinatesRobert Ivanek		Robert Ivaneksoftware28 Apr 20264,687150
illuminaio
Parsing Illumina Microarray Output FilesKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20264,4194
oligo
Preprocessing tools for oligonucleotide arraysBenilton Carvalho		Benilton Carvalhosoftware28 Apr 20264,08752
minfi
Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20264,041143
snpStats
SnpMatrix and XSnpMatrix classes and methodsDavid Clayton		David Claytonsoftware28 Apr 20263,48812
affxparser
Affymetrix File Parsing SDKKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20263,3270
marray
Exploratory analysis for two-color spotted microarray dataYee Hwa (Jean) Yang		Yee Hwa (Jean) Yangsoftware28 Apr 20263,3117
topGO
Enrichment Analysis for Gene OntologyFederico Marini		Federico Marinisoftware28 Apr 20263,22848
variancePartition
Quantify and interpret drivers of variation in multilevel gene expression experimentsGabriel E. Hoffman		Gabriel E. Hoffmansoftware28 Apr 20263,21199
interactiveDisplayBase
Base package for enabling powerful shiny web displays of Bioconductor objects		no date on record2,988
globaltest
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set TestingJelle Goeman		Jelle Goemansoftware28 Apr 20262,84250
methylumi
Handle Illumina methylation dataSean Davis		Sean Davissoftware16 Aug 20262,825158
aroma.light
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data TypesHenrik Bengtsson		Henrik Bengtssonsoftware28 Apr 20262,4818
lumi
BeadArray Specific Methods for Illumina Methylation and Expression MicroarraysLei Huang		Lei Huangsoftware28 Apr 20262,454165