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Topic: Classification

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Release: Release 3.5 (2017)

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97 packages on Bioconductor, most distinct IPs first

Classification in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
phyloseq
Handling and analysis of high-throughput microbiome census dataPaul J. McMurdie		Paul J. McMurdiesoftware28 Apr 20268,37966
DirichletMultinomial
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome DataMartin Morgan		Martin Morgansoftware28 Sep 20266,4909
dada2
Accurate, high-resolution sample inference from amplicon sequencing dataBenjamin Callahan		Benjamin Callahansoftware28 Apr 20264,20675
maftools
Summarize, Analyze and Visualize MAF FilesAnand Mayakonda		Anand Mayakondasoftware28 Apr 20263,52326
interactiveDisplayBase
Base package for enabling powerful shiny web displays of Bioconductor objects		no date on record2,988
ropls
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics dataEtienne A. Thevenot		Etienne A. Thevenotsoftware28 Apr 20262,96997
metagenomeSeq
Statistical analysis for sparse high-throughput sequencingJoseph N. Paulson		Joseph N. Paulsonsoftware28 Apr 20262,92432
fastseg
fastseg - a fast segmentation algorithmAlexander Blume		Alexander Blumesoftware28 Apr 20261,88413
pRoloc
A unifying bioinformatics framework for spatial proteomicsLisa Breckels		Lisa Breckelssoftware28 Apr 20261,689230
MLInterfaces
Uniform interfaces to R machine learning procedures for data in Bioconductor containersVincent Carey		Vincent Careysoftware28 Apr 20261,628120
genefu
Computation of Gene Expression-Based Signatures in Breast CancerBenjamin Haibe-Kains		Benjamin Haibe-Kainssoftware28 Apr 20261,619116
Cardinal
A mass spectrometry imaging toolbox for statistical analysisKylie Ariel Bemis		Kylie Ariel Bemissoftware28 Apr 20261,40531
SC3
Single-Cell Consensus ClusteringVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,36892
PharmacoGx
Analysis of Large-Scale Pharmacogenomic DataBenjamin Haibe-Kains		Benjamin Haibe-Kainssoftware28 Apr 20261,325143
made4
Multivariate analysis of microarray data using ADE4Aedin Culhane		Aedin Culhanesoftware28 Apr 20261,27938
AIMS
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular SubtypeEric R Paquet		Eric R Paquetsoftware28 Apr 20261,21211
CRImage
CRImage a package to classify cells and calculate tumour cellularityHenrik Failmezger		Henrik Failmezgersoftware28 Apr 20261,20262
GenVisR
Genomic Visualizations in RZachary Skidmore		Zachary Skidmoresoftware28 Apr 20261,200113
ClassifyR
A framework for cross-validated classification problems, with applications to differential variability and differential distribution testingDario Strbenac		Dario Strbenacsoftware28 Apr 20261,189147
iCOBRA
Comparison and Visualization of Ranking and Assignment MethodsCharlotte Soneson		Charlotte Sonesonsoftware28 Apr 20261,18282
MethPed
A DNA methylation classifier tool for the identification of pediatric brain tumor subtypesHelena Carén		Helena Carénsoftware28 Apr 20261,1599
flowcatchR
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cellsFederico Marini		Federico Marinisoftware28 Apr 20261,14997
cancerclass
Development and validation of diagnostic tests from high-dimensional molecular dataDaniel Kosztyla		Daniel Kosztylasoftware28 Apr 20261,1138
phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.Evarist Planet		Evarist Planetsoftware28 Apr 20261,104139
EGSEA
Ensemble of Gene Set Enrichment AnalysesMonther Alhamdoosh		Monther Alhamdooshsoftware28 Apr 20261,092192
PAA
PAA (Protein Array Analyzer)Michael Turewicz		Michael Turewiczsoftware28 Apr 20261,08484
kebabs
Kernel-Based Analysis of Biological SequencesUlrich Bodenhofer		Ulrich Bodenhofersoftware17 Sep 20261,07925
normr
Normalization and difference calling in ChIP-seq dataJohannes Helmuth		Johannes Helmuthsoftware21 May 20261,06483
DaMiRseq
Data Mining for RNA-seq data: normalization, feature selection and classificationMattia Chiesa		Mattia Chiesasoftware28 Apr 20261,055258
gpls
Classification using generalized partial least squaresBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20261,0451