phenoTest
Bioc currentTools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.
Release Lineage
Entered 2.8 · Apr 14, 2011
Current · Requires R 4.6
Description
Tools to test correlation between gene expression and phenotype in a way that is efficient, structured, fast and scalable. GSEA is also provided.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
50 20 exported
Complexity
6.6 avg / 57 max
Call network
50 nodes / 29 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,807
Files
68
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
21
Internal functions
32
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
69
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6.0
System requirements
–
C++ standard
–
License
GPL (>=2)
License flags
not SPDX, not OSI
History
Versions
31
First release
2011-04-13
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
100%
Dep drift
11
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 22%
- References docs
- 22%
Topics
Depended on by (1)
Bioconductor (1)
People
Evarist Planet
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("phenoTest")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.