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Topic: Spatial or MicroarrayData or GraphAndNetwork

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Release: Release 3.4 (2016)

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201 packages on Bioconductor tagged Spatial or MicroarrayData or GraphAndNetwork, most distinct IPs first

Spatial, MicroarrayData and GraphAndNetwork in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
graph
graph: A package to handle graph data structuresBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202625,6557
GSEABase
Gene set enrichment data structures and methodsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202613,34446
Rgraphviz
Provides plotting capabilities for R graph objectsKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 202611,26310
RBGL
An interface to the BOOST graph libraryBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202610,6989
graphite
GRAPH Interaction from pathway Topological EnvironmentGabriele Sales		Gabriele Salessoftware28 Apr 20267,01248
KEGGgraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and BioconductorJitao David Zhang		Jitao David Zhangsoftware28 Apr 20266,80714
pathview
a tool set for pathway based data integration and visualizationWeijun Luo		Weijun Luosoftware28 Apr 20265,70650
GOstats
Tools for manipulating GO and microarraysBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20262,43763
SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbationsAdi Laurentiu Tarca		Adi Laurentiu Tarcasoftware28 Apr 20261,83915
RCy3
Functions to Access and Control CytoscapeJing Chen		Jing Chensoftware28 Apr 20261,82249
minet
Mutual Information NETworksPatrick E. Meyer		Patrick E. Meyersoftware28 Apr 20261,5431
qpgraph
Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics DataRobert Castelo		Robert Castelosoftware28 Apr 20261,49581
EnrichmentBrowser
Seamless navigation through combined results of set-based and network-based enrichment analysisLudwig Geistlinger		Ludwig Geistlingersoftware28 Apr 20261,43292
RedeR
Interactive visualization and manipulation of nested networksMauro Castro		Mauro Castrosoftware14 Jul 20261,31723
BioNet
Routines for the functional analysis of biological networksMarcus Dittrich		Marcus Dittrichsoftware28 Apr 20261,26250
affydata
Affymetrix Data for Demonstration PurposeRobert D Shear		Robert D Shearexperiment5 May 20261,24412
GeneNetworkBuilder
GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression DataJianhong Ou		Jianhong Ousoftware28 Apr 20261,21669
rTRM
Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction NetworksDiego Diez		Diego Diezsoftware28 Apr 20261,11747
keggorthology
graph support for KO, KEGG OrthologyVJ Carey		VJ Careysoftware28 Apr 20261,11045
pandaR
PANDA AlgorithmJoseph N. Paulson		Joseph N. Paulsonsoftware28 Apr 20261,09337
EGSEA
Ensemble of Gene Set Enrichment AnalysesMonther Alhamdoosh		Monther Alhamdooshsoftware28 Apr 20261,092192
goProfiles
goProfiles: an R package for the statistical analysis of functional profilesAlex Sanchez		Alex Sanchezsoftware28 Apr 20261,06547
bladderbatch
Bladder gene expression data illustrating batch effectsJeffrey T. Leek		Jeffrey T. Leekexperiment5 May 20261,0497
biocGraph
Graph examples and use cases in BioinformaticsFlorian Hahne		Florian Hahnesoftware28 Apr 20261,03551
TRONCO
TRONCO, an R package for TRanslational ONCOlogyLuca De Sano		Luca De Sanosoftware28 Apr 20261,02547
GraphAT
Graph Theoretic Association TestsThomas LaFramboise		Thomas LaFramboisesoftware28 Apr 20261,02321
RTN
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulonsMauro Castro		Mauro Castrosoftware28 Apr 20261,023142
apComplex
Estimate protein complex membership using AP-MS protein dataDenise Scholtens		Denise Scholtenssoftware28 Apr 20261,00948
MetaboSignal
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathwaysAndrea Rodriguez-Martinez		Andrea Rodriguez-Martinezsoftware23 Jul 2026985205
DEsubs
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experimentsAristidis G. Vrahatis		Aristidis G. Vrahatissoftware28 Apr 2026971100