MetaboSignal
Bioc currentMetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
Release Lineage
Entered 3.4 · Oct 18, 2016
Current · Requires R 4.6
Description
MetaboSignal is an R package that allows merging, analyzing and customizing metabolic and signaling KEGG pathways. It is a network-based approach designed to explore the topological relationship between genes (signaling- or enzymatic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape and regulatory networks of metabolic phenotypes.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
69 0 exported
Complexity
4.5 avg / 29 max
Call network
69 nodes / 50 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,968
Files
66
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
19
Internal functions
69
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
0%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.3
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
20
First release
2016-10-20
Latest release
2026-07-21
Avg cadence
183 days
Cold removal rate
100%
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 27
- Examples that run
- 63%12 run in a plain check · 7 only when donttest examples are enabled (R CMD check --as-cran)
- Exported functions with examples
- not tracked
- Documented parameters
- not tracked
- Return-value docs
- not tracked
- Help pages citing references
- 52%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| MetaboSignal_table | matrix | 1,745 × 3 | No other package |
| directionality_reactions | matrix | 101 × 2 | No other package |
| hpaNormalTissue | data.frame | 1,031,835 × 6 | No other package |
| keggNet_example | matrix | 45,779 × 3 | No other package |
| kegg_pathways | matrix | 211 × 4 | No other package |
| mergedNet_example | matrix | 87,624 × 3 | No other package |
| ppiNet_example | matrix | 50,087 × 3 | No other package |
| regulatory_interactions | matrix | 50,566 × 7 | No other package |
Topics
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' entry:
citation("MetaboSignal")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/bioinformatics/btw697.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.