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Release: Release 3.19 (2024)

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174 packages on Bioconductor, most distinct IPs first

Classification in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
BiocNeighbors
Nearest Neighbor Detection for Bioconductor PackagesAaron Lun		Aaron Lunsoftware28 Apr 202616,61924
phyloseq
Handling and analysis of high-throughput microbiome census dataPaul J. McMurdie		Paul J. McMurdiesoftware28 Apr 20268,37966
SingleR
Reference-Based Single-Cell RNA-Seq AnnotationAaron Lun		Aaron Lunsoftware10 Sep 20266,76128
DirichletMultinomial
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome DataMartin Morgan		Martin Morgansoftware28 Sep 20266,4909
mixOmics
Omics Data Integration ProjectDerek Lei		Derek Leisoftware28 Apr 20265,37083
dada2
Accurate, high-resolution sample inference from amplicon sequencing dataBenjamin Callahan		Benjamin Callahansoftware28 Apr 20264,20675
maftools
Summarize, Analyze and Visualize MAF FilesAnand Mayakonda		Anand Mayakondasoftware28 Apr 20263,52326
decontam
Identify Contaminants in Marker-gene and Metagenomics Sequencing DataBenjamin Callahan		Benjamin Callahansoftware28 Apr 20263,00930
interactiveDisplayBase
Base package for enabling powerful shiny web displays of Bioconductor objects		no date on record2,988
ropls
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics dataEtienne A. Thevenot		Etienne A. Thevenotsoftware28 Apr 20262,96997
metagenomeSeq
Statistical analysis for sparse high-throughput sequencingJoseph N. Paulson		Joseph N. Paulsonsoftware28 Apr 20262,92432
fastseg
fastseg - a fast segmentation algorithmAlexander Blume		Alexander Blumesoftware28 Apr 20261,88413
quantiseqr
Quantification of the Tumor Immune contexture from RNA-seq dataFederico Marini		Federico Marinisoftware28 Apr 20261,72758
pRoloc
A unifying bioinformatics framework for spatial proteomicsLisa Breckels		Lisa Breckelssoftware28 Apr 20261,689230
MLInterfaces
Uniform interfaces to R machine learning procedures for data in Bioconductor containersVincent Carey		Vincent Careysoftware28 Apr 20261,628120
genefu
Computation of Gene Expression-Based Signatures in Breast CancerBenjamin Haibe-Kains		Benjamin Haibe-Kainssoftware28 Apr 20261,619116
scRepertoire
A toolkit for single-cell immune receptor profilingNick Borcherding		Nick Borcherdingsoftware28 Apr 20261,571115
scds
In-Silico Annotation of Doublets for Single Cell RNA Sequencing DataDennis Kostka		Dennis Kostkasoftware28 Apr 20261,49745
Cardinal
A mass spectrometry imaging toolbox for statistical analysisKylie Ariel Bemis		Kylie Ariel Bemissoftware28 Apr 20261,40531
SC3
Single-Cell Consensus ClusteringVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,36892
PharmacoGx
Analysis of Large-Scale Pharmacogenomic DataBenjamin Haibe-Kains		Benjamin Haibe-Kainssoftware28 Apr 20261,325143
lefser
R implementation of the LEfSE method for microbiome biomarker discoverySehyun Oh		Sehyun Ohsoftware28 Apr 20261,302176
made4
Multivariate analysis of microarray data using ADE4Aedin Culhane		Aedin Culhanesoftware28 Apr 20261,27938
scmap
A tool for unsupervised projection of single cell RNA-seq dataVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,27062
AIMS
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular SubtypeEric R Paquet		Eric R Paquetsoftware28 Apr 20261,21211
CRImage
CRImage a package to classify cells and calculate tumour cellularityHenrik Failmezger		Henrik Failmezgersoftware28 Apr 20261,20262
GenVisR
Genomic Visualizations in RZachary Skidmore		Zachary Skidmoresoftware28 Apr 20261,200113
rexposome
Exposome exploration and outcome data analysisXavier Escribà Montagut		Xavier Escribà Montagutsoftware11 May 20261,196174
ClassifyR
A framework for cross-validated classification problems, with applications to differential variability and differential distribution testingDario Strbenac		Dario Strbenacsoftware28 Apr 20261,189147
iCOBRA
Comparison and Visualization of Ranking and Assignment MethodsCharlotte Soneson		Charlotte Sonesonsoftware28 Apr 20261,18282