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rexposome

Bioc current

Exposome exploration and outcome data analysis

v1.34.2 · software · MIT + file LICENSE
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.6 · Oct 31, 2017

Current · Requires R 4.6

1.0 In 18 of 49 releases 3.23

Description

Package that allows to explore the exposome and to perform association analyses between exposures and health outcomes.

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

26 6 exported

Complexity

5.5 avg / 15 max

Call network

26 nodes / 7 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →
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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

10,416

Files

170

Compiled share

0%

Has compiled src

No

Language breakdown

R 5,760 (55.3%)Docs 3,089 (29.7%)Vignettes 1,567 (15%)

API

Exported functions

43

Internal functions

20

Recent export changes

v3.8+1 extract
v3.6+39 classification, clustering, correlation +36 more

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

–

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.5

System requirements

–

C++ standard

–

License

MIT + file LICENSE

License flags

SPDX valid, OSI approved

History

Versions

18

First release

2017-10-30

Latest release

2026-05-11

Avg cadence

181 days

Cold removal rate

–

Dep drift

3

LOC over versions

v3.6: 9,749 LOCv3.7: 9,749 LOCv3.8: 9,989 LOCv3.9: 9,989 LOCv3.10: 9,989 LOCv3.11: 9,989 LOCv3.12: 11,293 LOCv3.13: 11,299 LOCv3.14: 11,299 LOCv3.15: 10,419 LOCv3.16: 10,419 LOCv3.17: 10,419 LOCv3.18: 10,419 LOCv3.19: 10,419 LOCv3.20: 10,419 LOCv3.21: 10,419 LOCv3.22: 10,418 LOCv3.23: 10,416 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 578 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
91%
Documented parameters
100%
Return-value docs
100%
References docs
4%

Topics

Software
Software › BiologicalQuestion
Software › Infrastructure
Software › Infrastructure › DataImport
Software › Infrastructure › DataRepresentation
Software › ResearchField › BiomedicalInformatics
Software › WorkflowStep › ExperimentalDesign
Software › WorkflowStep › MultipleComparison
Software › StatisticalMethod › Classification
Software › StatisticalMethod › Clustering

Depended on by (2)

Bioconductor (2)

omicRexposome brgedata

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