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scRepertoire

Bioc current

A toolkit for single-cell immune receptor profiling

v2.8.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.12 · Oct 28, 2020

Current · Requires R 4.6

1.0 In 12 of 49 releases 3.23

Description

scRepertoire is a toolkit for processing and analyzing single-cell T-cell receptor (TCR) and immunoglobulin (Ig). The scRepertoire framework supports use of 10x, AIRR, BD, MiXCR, TRUST4, and WAT3R single-cell formats. The functionality includes basic clonal analyses, repertoire summaries, distance-based clustering and interaction with the popular Seurat and SingleCellExperiment/Bioconductor R single-cell workflows.

Code

Code metrics have not been computed for this package yet.

Topics

Software
Software › ResearchField › Immunology › ImmunoOncology
Software › Technology › SingleCell
Software › StatisticalMethod › Classification
Software › WorkflowStep › Annotation
Software › Technology › Sequencing

Depended on by (5)

Bioconductor (5)

dandelionR Ibex immApex immLynx immGLIPH

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