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Release: Release 3.16 (2022)

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410 packages on Bioconductor, most distinct IPs first

ExperimentData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
ggtree
an R package for visualization of tree and annotation dataGuangchuang Yu		Guangchuang Yusoftware29 Oct 202634,37279
TCGAbiolinksGUI.data
Data for the TCGAbiolinksGUI packageTiago Chedraoui Silva		Tiago Chedraoui Silvaexperiment5 May 20265,7580
celldex
Index of Reference Cell Type DatasetsAaron Lun		Aaron Lunexperiment5 May 20265,71795
ALL
A data packageRobert Gentleman		Robert Gentlemanexperiment5 May 20264,1717
HSMMSingleCell
Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)Cole Trapnell		Cole Trapnellexperiment5 May 20263,5530
airway
RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014Michael Love		Michael Loveexperiment5 May 20262,85425
tximeta
Transcript Quantification Import with Automatic MetadataMichael Love		Michael Lovesoftware26 Oct 20262,485108
geneLenDataBase
Lengths of mRNA transcripts for a number of genomesFederico Marini		Federico Mariniexperiment5 May 20262,37898
scRNAseq
Collection of Public Single-Cell RNA-Seq DatasetsAaron Lun		Aaron Lunexperiment5 May 20262,314121
bcellViper
Human B-cell transcriptional interactome and normal human B-cell expression dataMariano Javier Alvarez		Mariano Javier Alvarezexperiment5 May 20262,1777
dorothea
Collection Of Human And Mouse TF RegulonsPau Badia-i-Mompel		Pau Badia-i-Mompelexperiment4 Nov 20252,11345
multiMiR
Integration of multiple microRNA-target databases with their disease and drug associationsSpencer Mahaffey		Spencer Mahaffeysoftware28 Apr 20261,56953
pasilla
Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes		Alejandro Reyesexperiment5 May 20261,554108
tximportData
tximportDataMichael Love		Michael Loveexperiment5 May 20261,3300
cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil		Gundula Povysilsoftware28 Apr 20261,25630
msdata
Various Mass Spectrometry raw data example filesSteffen Neumann		Steffen Neumannexperiment5 May 20261,2520
sesameData
Supporting Data for SeSAMe PackageWanding Zhou		Wanding Zhouexperiment5 May 20261,25072
affydata
Affymetrix Data for Demonstration PurposeRobert D Shear		Robert D Shearexperiment5 May 20261,24412
golubEsets
exprSets for golub leukemia dataVince Carey		Vince Careyexperiment5 May 20261,2077
flowDensity
Sequential Flow Cytometry Data GatingMehrnoush Malek		Mehrnoush Maleksoftware28 Apr 20261,125104
RNAseqData.HNRNPC.bam.chr14
Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cellsHervé Pagès		Hervé Pagèsexperiment5 May 20261,0690
faahKO
Saghatelian et al. (2004) FAAH knockout LC/MS dataSteffen Neumann		Steffen Neumannexperiment5 May 20261,061144
TENxPBMCData
PBMC data from 10X GenomicsStephanie Hicks		Stephanie Hicksexperiment5 May 20261,05683
bladderbatch
Bladder gene expression data illustrating batch effectsJeffrey T. Leek		Jeffrey T. Leekexperiment5 May 20261,0497
SeqSQC
A bioconductor package for sample quality check with next generation sequencing dataQian Liu		Qian Liusoftware28 Apr 20261,001113
depmap
Cancer Dependency Map Data PackageLaurent Gatto		Laurent Gattoexperiment5 May 20261,00064
pasillaBamSubset
Subset of BAM files from "Pasilla" experimentHervé Pagès		Hervé Pagèsexperiment5 May 20269970
GSVAdata
Data employed in the vignette of the GSVA packageRobert Castelo		Robert Casteloexperiment28 Jul 202695578
curatedMetagenomicData
Curated Metagenomic Data of the Human MicrobiomeLucas schiffer		Lucas schifferexperiment5 May 2026913148
recountmethylation
Access and analyze public DNA methylation array data compilationsSean K Maden		Sean K Madensoftware28 Apr 2026881152