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Topic: Epigenetics

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Release: Release 3.11 (2020)

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61 packages on Bioconductor, most distinct IPs first

Epigenetics in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
bumphunter
Bump HunterTamilselvi Guharaj		Tamilselvi Guharajsoftware28 Apr 20264,26883
minfi
Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20264,041143
variancePartition
Quantify and interpret drivers of variation in multilevel gene expression experimentsGabriel E. Hoffman		Gabriel E. Hoffmansoftware28 Apr 20263,21199
DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataRory Stark		Rory Starksoftware21 Jul 20262,490141
DMRcate
Methylation array and sequencing spatial analysis methodsTim Peters		Tim Peterssoftware3 May 20261,838224
EpiDISH
Epigenetic Dissection of Intra-Sample-HeterogeneityShijie C. Zheng		Shijie C. Zhengsoftware28 Apr 20261,79363
TOAST
Tools for the analysis of heterogeneous tissuesZiyi Li		Ziyi Lisoftware28 Apr 20261,454102
RnBeads
RnBeadsFabian Mueller		Fabian Muellersoftware28 Apr 20261,302170
dmrseq
Detection and inference of differentially methylated regions from Whole Genome Bisulfite SequencingKeegan Korthauer		Keegan Korthauersoftware28 Apr 20261,201149
TCseq
Time course sequencing data analysisMengjun Wu		Mengjun Wusoftware28 Apr 20261,18172
GOTHiC
Binomial test for Hi-C data analysisBorbala Mifsud		Borbala Mifsudsoftware28 Apr 20261,16186
MethPed
A DNA methylation classifier tool for the identification of pediatric brain tumor subtypesHelena Carén		Helena Carénsoftware28 Apr 20261,1599
ENmix
Quality control and analysis tools for Illumina DNA methylation BeadChipZongli Xu		Zongli Xusoftware28 Sep 20261,086163
cicero
Predict cis-co-accessibility from single-cell chromatin accessibility dataHannah Pliner		Hannah Plinersoftware28 Apr 20261,077179
BEAT
BEAT - BS-Seq Epimutation Analysis ToolkitKemal Akman		Kemal Akmansoftware28 Apr 20261,06970
omicsPrint
Cross omic genetic fingerprintingDavy Cats		Davy Catssoftware28 Apr 20261,06048
chipenrich
Gene Set Enrichment For ChIP-seq Peak DataKai Wang		Kai Wangsoftware28 Apr 2026997158
fCCAC
functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasetsPedro Madrigal		Pedro Madrigalsoftware28 Apr 2026986133
DEScan2
Differential Enrichment Scan 2Dario Righelli		Dario Righellisoftware28 Apr 2026978128
COCOA
Coordinate Covariation AnalysisJohn Lawson		John Lawsonsoftware28 Apr 2026965126
mCSEA
Methylated CpGs Set Enrichment AnalysisJordi Martorell-Marugán		Jordi Martorell-Marugánsoftware14 May 2026950165
MEAT
Muscle Epigenetic Age TestSarah Voisin		Sarah Voisinsoftware28 Apr 2026937180
metaseqR2
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithmsPanagiotis Moulos		Panagiotis Moulossoftware28 Apr 2026925237
sevenC
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifsJonas Ibn-Salem		Jonas Ibn-Salemsoftware28 Apr 202690183
omicRexposome
Exposome and omic data associatin and integration analysisXavier Escribà Montagut		Xavier Escribà Montagutsoftware7 May 2026900229
MIRA
Methylation-Based Inference of Regulatory ActivityJohn Lawson		John Lawsonsoftware28 Apr 202689496
methylInheritance
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment EffectAstrid Deschênes		Astrid Deschênessoftware28 Apr 2026886106
OMICsPCA
An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samplesSubhadeep Das		Subhadeep Dassoftware28 Apr 2026884215