TCseq
Bioc currentTime course sequencing data analysis
Release Lineage
Entered 3.5 · Apr 25, 2017
Current · Requires R 4.6
Description
Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of the temporal patterns of time course data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
18 10 exported
Complexity
8.4 avg / 22 max
Call network
18 nodes / 10 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,171
Files
43
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
17
Internal functions
8
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.04
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
100%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.4
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
19
First release
2017-04-24
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 98%
- Return-value docs
- 100%
- References docs
- 12%
Topics
Depended on by (1)
Bioconductor (1)
People
Mengjun Wu
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("TCseq")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.