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Topic: SingleCell or Epigenetics or Classification

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Release: Release 3.0 (2014)

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81 packages on Bioconductor tagged SingleCell or Epigenetics or Classification, most distinct IPs first

SingleCell, Epigenetics and Classification in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
phyloseq
Handling and analysis of high-throughput microbiome census dataPaul J. McMurdie		Paul J. McMurdiesoftware28 Apr 20268,37966
DirichletMultinomial
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome DataMartin Morgan		Martin Morgansoftware28 Sep 20266,4909
bumphunter
Bump HunterTamilselvi Guharaj		Tamilselvi Guharajsoftware28 Apr 20264,26883
minfi
Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20264,041143
interactiveDisplayBase
Base package for enabling powerful shiny web displays of Bioconductor objects		no date on record2,988
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
metagenomeSeq
Statistical analysis for sparse high-throughput sequencingJoseph N. Paulson		Joseph N. Paulsonsoftware28 Apr 20262,92432
DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataRory Stark		Rory Starksoftware21 Jul 20262,490141
fastseg
fastseg - a fast segmentation algorithmAlexander Blume		Alexander Blumesoftware28 Apr 20261,88413
DMRcate
Methylation array and sequencing spatial analysis methodsTim Peters		Tim Peterssoftware3 May 20261,838224
pRoloc
A unifying bioinformatics framework for spatial proteomicsLisa Breckels		Lisa Breckelssoftware28 Apr 20261,689230
MLInterfaces
Uniform interfaces to R machine learning procedures for data in Bioconductor containersVincent Carey		Vincent Careysoftware28 Apr 20261,628120
genefu
Computation of Gene Expression-Based Signatures in Breast CancerBenjamin Haibe-Kains		Benjamin Haibe-Kainssoftware28 Apr 20261,619116
made4
Multivariate analysis of microarray data using ADE4Aedin Culhane		Aedin Culhanesoftware28 Apr 20261,27938
AIMS
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular SubtypeEric R Paquet		Eric R Paquetsoftware28 Apr 20261,21211
CRImage
CRImage a package to classify cells and calculate tumour cellularityHenrik Failmezger		Henrik Failmezgersoftware28 Apr 20261,20262
ClassifyR
A framework for cross-validated classification problems, with applications to differential variability and differential distribution testingDario Strbenac		Dario Strbenacsoftware28 Apr 20261,189147
GOTHiC
Binomial test for Hi-C data analysisBorbala Mifsud		Borbala Mifsudsoftware28 Apr 20261,16186
flowcatchR
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cellsFederico Marini		Federico Marinisoftware28 Apr 20261,14997
cancerclass
Development and validation of diagnostic tests from high-dimensional molecular dataDaniel Kosztyla		Daniel Kosztylasoftware28 Apr 20261,1138
phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.Evarist Planet		Evarist Planetsoftware28 Apr 20261,104139
PAA
PAA (Protein Array Analyzer)Michael Turewicz		Michael Turewiczsoftware28 Apr 20261,08484
kebabs
Kernel-Based Analysis of Biological SequencesUlrich Bodenhofer		Ulrich Bodenhofersoftware17 Sep 20261,07925
BEAT
BEAT - BS-Seq Epimutation Analysis ToolkitKemal Akman		Kemal Akmansoftware28 Apr 20261,06970
gpls
Classification using generalized partial least squaresBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20261,0451
geNetClassifier
Classify diseases and build associated gene networks using gene expression profilesSara Aibar		Sara Aibarsoftware28 Apr 20261,04317
CMA
Synthesis of microarray-based classificationRoman Hornung		Roman Hornungsoftware28 Apr 20261,0397
procoil
Prediction of Oligomerization of Coiled Coil ProteinsUlrich Bodenhofer		Ulrich Bodenhofersoftware28 Apr 20261,00626