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Topic: Spatial or MicroarrayData or QualityControl

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Release: Release 2.8 (2011)

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60 packages on Bioconductor tagged Spatial or MicroarrayData or QualityControl, most distinct IPs first

Spatial, MicroarrayData and QualityControl in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202630,33728
ShortRead
FASTQ input and manipulationBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20268,12653
MSnbase
Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto		Laurent Gattosoftware9 Aug 20265,521134
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
methylumi
Handle Illumina methylation dataSean Davis		Sean Davissoftware16 Aug 20262,825158
lumi
BeadArray Specific Methods for Illumina Methylation and Expression MicroarraysLei Huang		Lei Huangsoftware28 Apr 20262,454165
affyPLM
Methods for fitting probe-level modelsBen Bolstad		Ben Bolstadsoftware28 Apr 20262,43022
beadarray
Quality assessment and low-level analysis for Illumina BeadArray dataMark Dunning		Mark Dunningsoftware31 Aug 20261,74065
chipseq
chipseq: A package for analyzing chipseq dataBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20261,62654
arrayQualityMetrics
Quality metrics report for microarray data setsHugo Gruson		Hugo Grusonsoftware28 Apr 20261,312124
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,19455
segmentSeq
Methods for identifying small RNA loci from high-throughput sequencing dataSamuel Granjeaud		Samuel Granjeaudsoftware28 Apr 20261,17059
limmaGUI
GUI for limma Package With Two Color MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,16511
OLIN
Optimized local intensity-dependent normalisation of two-color microarraysMatthias Futschik		Matthias Futschiksoftware28 Apr 20261,12311
HTqPCR
Automated analysis of high-throughput qPCR dataMatthew N. McCall		Matthew N. McCallsoftware28 Apr 20261,12221
altcdfenvs
alternative CDF environments (aka probeset mappings)Laurent Gautier		Laurent Gautiersoftware28 Apr 20261,11323
MEDIPS
DNA IP-seq data analysisLukas Chavez		Lukas Chavezsoftware28 Apr 20261,093102
R453Plus1Toolbox
A package for importing and analyzing data from Roche's Genome Sequencer SystemHans-Ulrich Klein		Hans-Ulrich Kleinsoftware28 Apr 20261,071111
dyebias
The GASSCO method for correcting for slide-dependent gene-specific dye biasPhilip Lijnzaad		Philip Lijnzaadsoftware28 Apr 20261,03511
arrayMvout
multivariate outlier detection for expression array QAV. Carey		V. Careysoftware28 Apr 20261,019171
TEQC
Quality control for target capture experimentsSarah Bonnin		Sarah Bonninsoftware28 Apr 20261,00031
RPA
RPA: Robust Probabilistic Averaging for probe-level analysisLeo Lahti		Leo Lahtisoftware28 Apr 202695192
arrayQuality
Assessing array quality on spotted arraysAgnes Paquet		Agnes Paquetsoftware28 Apr 202694213
HELP
Tools for HELP data analysisReid F. Thompson		Reid F. Thompsonsoftware28 Apr 20269328
OLINgui
Graphical user interface for OLINMatthias Futschik		Matthias Futschiksoftware28 Apr 202686417
MANOR
CGH Micro-Array NORmalizationPierre Neuvial		Pierre Neuvialsoftware28 Apr 20268559
pvac
PCA-based gene filtering for Affymetrix arraysJun Lu		Jun Lusoftware28 Apr 202683712
clstutils
Tools for performing taxonomic assignmentNoah Hoffman		Noah Hoffmansoftware28 Apr 202683436