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RPA: Robust Probabilistic Averaging for probe-level analysis

v1.68.0 · software · BSD_2_clause + file LICENSE
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Release Lineage

Entered 2.5 · Oct 28, 2009

Current · Requires R 4.6

1.0 In 34 of 49 releases 3.23

Description

Probabilistic analysis of probe reliability and differential gene expression on short oligonucleotide arrays.

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

64 32 exported

Complexity

3.9 avg / 16 max

Call network

64 nodes / 69 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →
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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

4,915

Files

181

Compiled share

0%

Has compiled src

No

Language breakdown

R 3,054 (62.1%)Tests 5 (0.1%)Docs 1,770 (36%)Vignettes 86 (1.7%)

API

Exported functions

32

Internal functions

32

Testing & CI

Has tests

Yes

Test-to-code ratio

0.00

testthat edition

–

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

4

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.1.1

System requirements

–

C++ standard

–

License

BSD_2_clause + file LICENSE

License flags

SPDX valid, OSI approved

History

Versions

34

First release

2009-10-27

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

7

LOC over versions

v2.5: 1,173 LOCv2.6: 1,829 LOCv2.7: 1,856 LOCv2.8: 2,452 LOCv2.9: 3,021 LOCv2.10: 3,375 LOCv2.11: 3,545 LOCv2.12: 4,429 LOCv2.13: 4,429 LOCv2.14: 4,574 LOCv3.0: 4,342 LOCv3.1: 4,342 LOCv3.2: 4,342 LOCv3.3: 4,743 LOCv3.4: 4,743 LOCv3.5: 4,743 LOCv3.6: 4,743 LOCv3.7: 4,773 LOCv3.8: 4,773 LOCv3.9: 4,773 LOCv3.10: 4,773 LOCv3.11: 4,773 LOCv3.12: 4,773 LOCv3.13: 4,773 LOCv3.14: 4,932 LOCv3.15: 4,932 LOCv3.16: 4,932 LOCv3.17: 4,915 LOCv3.18: 4,915 LOCv3.19: 4,915 LOCv3.20: 4,915 LOCv3.21: 4,915 LOCv3.22: 4,915 LOCv3.23: 4,915 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 221 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
97%
Documented parameters
99%
Return-value docs
78%
References docs
100%

Topics

Software › AssayDomain › GeneExpression
Software › Technology › Microarray
Software › WorkflowStep › Preprocessing
Software › WorkflowStep › QualityControl

Depended on by (1)

Bioconductor (1)

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