arrayQuality
Bioc currentAssessing array quality on spotted arrays
Release Lineage
Entered 1.4 · May 17, 2004
Current · Requires R 4.6
Description
Functions for performing print-run and array level quality assessment.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
55 24 exported
Complexity
11.6 avg / 57 max
Call network
55 nodes / 58 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
12,954
Files
80
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
28
Internal functions
29
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.2.0
System requirements
–
C++ standard
–
License
LGPL
License flags
not SPDX, not OSI
History
Versions
45
First release
2004-08-23
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
13
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 25
- Examples that run
- 87%13 run in a plain check (4 of them under a condition) · 2 hold no code
- Exported functions with examples
- 68%
- Documented parameters
- 96%
- Return-value docs
- 82%
- Help pages citing references
- 0%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| HsReferenceDB | matrix | 15 × 27 | No other package |
| MmDEGenes | data.frame | 121 × 9 | No other package |
| MmReferenceDB | matrix | 15 × 16 | No other package |
Topics
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("arrayQuality")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.