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Topic: Transcription or MassSpectrometry

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Release: Release 2.11 (2012)

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51 packages on Bioconductor tagged Transcription or MassSpectrometry, most distinct IPs first

Transcription and MassSpectrometry in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann		Steffen Neumannsoftware28 Apr 20265,63915
MSnbase
Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto		Laurent Gattosoftware9 Aug 20265,521134
xcms
LC-MS and GC-MS Data AnalysisSteffen Neumann		Steffen Neumannsoftware7 Jul 20263,537143
MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno		Sergio Oller Morenosoftware7 Jul 20263,0960
goseq
Gene Ontology analyser for RNA-seq and other length biased dataFederico Marini		Federico Marinisoftware28 Apr 20262,404104
CAMERA
Collection of annotation related methods for mass spectrometry dataSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,548157
Rdisop
Decomposition of Isotopic PatternsSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,5083
qpgraph
Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics DataRobert Castelo		Robert Castelosoftware28 Apr 20261,49581
rols
An R interface to the Ontology Lookup ServiceSehyun Oh		Sehyun Ohsoftware12 Oct 20261,30422
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,19455
mosaics
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)Dongjun Chung		Dongjun Chungsoftware28 Apr 20261,14645
isobar
Analysis and quantitation of isobarically tagged MSMS proteomics dataFlorian P Breitwieser		Florian P Breitwiesersoftware28 Apr 20261,14378
RMassBank
Workflow to process tandem MS files and build MassBank recordsRMassBank at Eawag		RMassBank at Eawagsoftware28 Apr 20261,116175
altcdfenvs
alternative CDF environments (aka probeset mappings)Laurent Gautier		Laurent Gautiersoftware28 Apr 20261,11323
plgem
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)Norman Pavelka		Norman Pavelkasoftware28 Apr 20261,0479
BRAIN
Baffling Recursive Algorithm for Isotope distributioN calculationsPiotr Dittwald		Piotr Dittwaldsoftware28 Apr 20261,01419
tigre
Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela		Antti Honkelasoftware28 Apr 20261,01350
apComplex
Estimate protein complex membership using AP-MS protein dataDenise Scholtens		Denise Scholtenssoftware28 Apr 20261,00948
ExiMiR
R functions for the normalization of Exiqon miRNA array dataSylvain Gubian		Sylvain Gubiansoftware28 Apr 202699214
BicARE
Biclustering Analysis and Results ExplorationPierre Gestraud		Pierre Gestraudsoftware28 Apr 202696455
CoGAPS
Coordinated Gene Activity in Pattern SetsElana J. Fertig		Elana J. Fertigsoftware28 Apr 202695994
gaga
GaGa hierarchical model for high-throughput data analysisDavid Rossell		David Rossellsoftware28 Apr 202695917
netresponse
Functional Network AnalysisLeo Lahti		Leo Lahtisoftware28 Apr 202693869
GSRI
Gene Set Regulation IndexJulian Gehring		Julian Gehringsoftware28 Apr 202693664
CSAR
Statistical tools for the analysis of ChIP-seq dataJose M Muino		Jose M Muinosoftware28 Apr 202690611
PROcess
Ciphergen SELDI-TOF ProcessingXiaochun Li		Xiaochun Lisoftware28 Apr 202689311
les
Identifying Differential Effects in Tiling Microarray DataJulian Gehring		Julian Gehringsoftware28 Apr 202688113
TargetSearch
A package for the analysis of GC-MS metabolite profiling dataAlvaro Cuadros-Inostroza		Alvaro Cuadros-Inostrozasoftware28 Apr 20268398