TargetSearch
Bioc currentA package for the analysis of GC-MS metabolite profiling data
Release Lineage
Entered 2.4 · Apr 21, 2009
Current · Requires R 4.6
Description
This packages provides a flexible, fast and accurate method for targeted pre-processing of GC-MS data. The user provides a (often very large) set of GC chromatograms and a metabolite library of targets. The package will automatically search those targets in the chromatograms resulting in a data matrix that can be used for further data analysis.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
217 51 exported
Complexity
4.3 avg / 21 max
Call network
217 nodes / 240 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
12,973
Files
152
Compiled share
19.7%
Has compiled src
Yes
Language breakdown
API
Exported functions
51
Internal functions
50
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
35.7%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
35
First release
2009-04-20
Latest release
2026-04-28
Avg cadence
185 days
Cold removal rate
–
Dep drift
15
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 98%
- Documented parameters
- 98%
- Return-value docs
- 84%
- References docs
- 2%
Topics
People
- Alvaro Cuadros-Inostroza author maintainer
- Matt Hannah author
- Jan Lisec author
- Henning Redestig author