netresponse
Bioc currentFunctional Network Analysis
Release Lineage
Entered 2.7 · Oct 18, 2010
Current · Requires R 4.6
Description
Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
117 25 exported
Complexity
5 avg / 25 max
Call network
117 nodes / 129 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
11,623
Files
154
Compiled share
7.2%
Has compiled src
Yes
Language breakdown
API
Exported functions
25
Internal functions
71
Testing
Has tests
Yes
Test-to-code ratio
0.07
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.15.1
System requirements
–
C++ standard
–
License
GPL (>=2)
License flags
not SPDX, not OSI
History
Versions
32
First release
2011-01-16
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
100%
Dep drift
27
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 72 (18 internal)includes a package overview page
- Examples that run
- 47%25 run in a plain check · 1 never run · 27 hold no code
- Exported functions with examples
- 100%
- Documented parameters
- 95%
- Return-value docs
- 100%
- Help pages citing references
- 94%
- microbiome R package HTML
Repository practices
2 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/antagomir/netresponse on 2026-10-21.
GitHub Pages site last deployed 2016-11-09
Datasets
Topics
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' entry:
citation("netresponse")The package provides a citation file, so citation() returns the authors' own entry.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.