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Topic: MassSpectrometry or ImmunoOncology or SystemsBiology

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39 packages on Bioconductor tagged MassSpectrometry or ImmunoOncology or SystemsBiology, most distinct IPs first

MassSpectrometry, ImmunoOncology and SystemsBiology in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
ropls
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics dataEtienne A. Thevenot		Etienne A. Thevenotsoftware28 Apr 20262,96997
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
RUVSeq
Remove Unwanted Variation from RNA-Seq DataDavide Risso		Davide Rissosoftware28 Apr 20261,752116
ReportingTools
Tools for making reports in various formatsJason A. Hackney		Jason A. Hackneysoftware28 Apr 20261,637157
Rdisop
Decomposition of Isotopic PatternsSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,5083
recount
Explore and download data from the recount projectLeonardo Collado-Torres		Leonardo Collado-Torressoftware28 Apr 20261,442162
rpx
R Interface to the ProteomeXchange RepositoryLaurent Gatto		Laurent Gattosoftware29 Sep 20261,32946
RedeR
Interactive visualization and manipulation of nested networksMauro Castro		Mauro Castrosoftware14 Jul 20261,31723
rols
An R interface to the Ontology Lookup ServiceSehyun Oh		Sehyun Ohsoftware12 Oct 20261,30422
RnBeads
RnBeadsFabian Mueller		Fabian Muellersoftware28 Apr 20261,302170
RTCGA
The Cancer Genome Atlas Data IntegrationMarcin Kosinski		Marcin Kosinskisoftware30 Oct 20251,145132
RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore		Francesco Del Carratoresoftware28 Apr 20261,1426
RMassBank
Workflow to process tandem MS files and build MassBank recordsRMassBank at Eawag		RMassBank at Eawagsoftware28 Apr 20261,116175
recoup
An R package for the creation of complex genomic profile plotsPanagiotis Moulos		Panagiotis Moulossoftware28 Apr 20261,098119
rcellminer
rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell LinesAugustin Luna		Augustin Lunasoftware28 Apr 20261,02059
regionReport
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR resultsLeonardo Collado-Torres		Leonardo Collado-Torressoftware28 Apr 20261,010154
Rcpi
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug DiscoveryNan Xiao		Nan Xiaosoftware28 Apr 202698957
rgsepd
Gene Set Enrichment / Projection DisplaysKarl Stamm		Karl Stammsoftware28 Apr 2026953123
ROTS
Reproducibility-Optimized Test StatisticTomi Suomi		Tomi Suomisoftware28 Apr 202693035
rain
Rhythmicity Analysis Incorporating Non-parametric MethodsPaul F. Thaben		Paul F. Thabensoftware28 Apr 202687917
ReactomeGSA
Client for the Reactome Analysis Service for comparative multi-omics gene set analysisJohannes Griss		Johannes Grisssoftware11 May 202683786
RnaSeqSampleSize
RnaSeqSampleSizeShilin Zhao Developer		Shilin Zhao Developersoftware28 Apr 2026820210
RTCA
Open-source toolkit to analyse data from xCELLigence System (RTCA)Jitao David Zhang		Jitao David Zhangsoftware28 Apr 20267949
regsplice
L1-regularization based methods for detection of differential splicingLukas M. Weber		Lukas M. Webersoftware16 Jul 202679340
RIVER
R package for RIVER (RNA-Informed Variant Effect on Regulation)Yungil Kim		Yungil Kimsoftware28 Apr 202678238
regutools
regutools: an R package for data extraction from RegulonDBJoselyn Chavez		Joselyn Chavezsoftware28 Apr 2026757168
rScudo
Signature-based Clustering for Diagnostic PurposesMatteo Ciciani		Matteo Cicianisoftware28 Apr 202674336
RNASeqPower
Sample size for RNAseq studiesTerry M Therneau		Terry M Therneausoftware28 Apr 20267400
RiboDiPA
Differential pattern analysis for Ribo-seq dataJi-Ping Wang		Ji-Ping Wangsoftware28 Apr 2026723146
RVS
Computes estimates of the probability of related individuals sharing a rare variantAlexandre Bureau		Alexandre Bureausoftware28 Apr 202668960