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RTCGA

Bioc current

The Cancer Genome Atlas Data Integration

v1.41.0 · software · GPL-2
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.2 · Oct 14, 2015

Current · Requires R 4.6

1.0 In 22 of 49 releases 3.23

Description

The Cancer Genome Atlas (TCGA) Data Portal provides a platform for researchers to search, download, and analyze data sets generated by TCGA. It contains clinical information, genomic characterization data, and high level sequence analysis of the tumor genomes. The key is to understand genomics to improve cancer care. RTCGA package offers download and integration of the variety and volume of TCGA data using patient barcode key, what enables easier data possession. This may have an benefcial infuence on impact on development of science and improvement of patients' treatment. Furthermore, RTCGA package transforms TCGA data to tidy form which is convenient to use.

Code

Code metrics have not been computed for this package yet.

Topics

Software › ResearchField › Immunology › ImmunoOncology
Software
Software › Infrastructure › DataImport
Software › Infrastructure › DataRepresentation
Software › WorkflowStep › Preprocessing
Software › Technology › Sequencing › RNASeq
Software › StatisticalMethod › Survival
Software › AssayDomain › DNAMethylation
Software › StatisticalMethod › PrincipalComponent
Software › WorkflowStep › Visualization

Depended on by (9)

Bioconductor (9)

RTCGA.clinical RTCGA.CNV RTCGA.methylation RTCGA.miRNASeq RTCGA.mRNA RTCGA.mutations RTCGA.PANCAN12 RTCGA.rnaseq RTCGA.RPPA

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