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RiboDiPA

Bioc current

Differential pattern analysis for Ribo-seq data

v1.20.0 · software · LGPL (>= 3)
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.13 · May 20, 2021

Current · Requires R 4.6

1.0 In 11 of 49 releases 3.23

Description

This package performs differential pattern analysis for Ribo-seq data. It identifies genes with significantly different patterns in the ribosome footprint between two conditions. RiboDiPA contains five major components including bam file processing, P-site mapping, data binning, differential pattern analysis and footprint visualization.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Technology › Sequencing › RiboSeq
Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › GeneRegulation
Software › BiologicalQuestion › DifferentialExpression
Software › Technology › Sequencing
Software › BiologicalQuestion › Coverage
Software › WorkflowStep › Alignment
Software › Technology › Sequencing › RNASeq
Software › ResearchField › Immunology › ImmunoOncology
Software › WorkflowStep › QualityControl
Software › Infrastructure › DataImport
Software
Software › WorkflowStep › Normalization

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