ROTS
Bioc currentReproducibility-Optimized Test Statistic
Release Lineage
Entered 3.3 · May 4, 2016
Current · Requires R 4.6
Description
Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
38 5 exported
Complexity
6.3 avg / 45 max
Call network
38 nodes / 24 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,347
Files
50
Compiled share
12.3%
Has compiled src
Yes
Language breakdown
API
Exported functions
5
Internal functions
5
Testing
Has tests
Yes
Test-to-code ratio
0.10
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
21
First release
2016-05-03
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 11includes a package overview page
- Examples that run
- 33%3 run in a plain check · 6 never run
- Exported functions with examples
- 100%
- Documented parameters
- 85%
- Return-value docs
- 100%
- Help pages citing references
- 18%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| affySpikeIn | matrix | 1,000 × 10 | No other package |
| affySpikeIn.L | vector | 10 elements | No other package |
| affySpikeIn.gnames | vector | 1,000 elements | No other package |
| spikedgene | vector | 14 elements | No other package |
| upsSpikeIn | data.frame | 736 × 6 | No other package |
Topics
Depended on by (4)
Bioconductor (4)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' entry:
citation("ROTS")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1371/journal.pcbi.1005562.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.