rpx
Bioc currentR Interface to the ProteomeXchange Repository
Release Lineage
Entered 2.14 · Apr 14, 2014
Current · Requires R 4.6
Description
The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
29 14 exported
Complexity
2.1 avg / 8 max
Call network
29 nodes / 16 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,070
Files
25
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
15
Internal functions
15
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.08
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
25
First release
2014-07-15
Latest release
2026-09-28
Avg cadence
189 days
Cold removal rate
100%
Dep drift
7
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 5
- Examples that run
- 100%4 run in a plain check
- Exported functions with examples
- 80%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 60%
- Fix unit test to address remote changes.
From NEWS.md in the release
Repository practices
6 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/lgatto/rpx on 2026-10-11.
The R CMD check workflow runs on Linux
GitHub Pages site last deployed 2026-09-28 · The repository has a site deploy workflow
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| file_types | data.frame | 226 × 3 | No other package |
Topics
Depended on by (1)
Bioconductor (1)
Suggested by (4)
People
- Laurent Gatto author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("rpx")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.