Rcpi
Bioc currentMolecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Release Lineage
Entered 2.14 · Apr 14, 2014
Current · Requires R 4.6
Description
A molecular informatics toolkit with an integration of bioinformatics and chemoinformatics tools for drug discovery.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
149 129 exported
Complexity
3 avg / 22 max
Call network
149 nodes / 150 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
18,575
Files
375
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
129
Internal functions
20
Testing
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
171
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.0.2
System requirements
–
C++ standard
–
License
Artistic-2.0 | file LICENSE
License flags
SPDX valid, not OSI
History
Versions
25
First release
2014-09-10
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
12
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 166 (1 internal)includes a package overview page
- Examples that run
- 99%163 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran) · 1 hold no code
- Exported functions with examples
- 100%
- Documented parameters
- 98%
- Return-value docs
- 100%
- Help pages citing references
- 27%
Repository practices
8 development-tooling and community-health practices detected across 4 families in the upstream repository
Checks run against github.com/nanxstats/rcpi on 2026-10-18.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2024-09-18 · The repository has a site deploy workflow
pkgdown site last built 2024-09-18
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| AA2DACOR | data.frame | 20 × 92 | 3 packages |
| AA3DMoRSE | data.frame | 20 × 160 | 3 packages |
| AAACF | data.frame | 20 × 6 | 3 packages |
| AABLOSUM100 | matrix | 20 × 20 | 3 packages |
| AABLOSUM45 | matrix | 20 × 20 | 3 packages |
| AABLOSUM50 | matrix | 20 × 20 | 3 packages |
| AABLOSUM62 | matrix | 20 × 20 | 3 packages |
| AABLOSUM80 | matrix | 20 × 20 | 3 packages |
| AABurden | data.frame | 20 × 62 | 3 packages |
| AACPSA | data.frame | 20 × 41 | 3 packages |
| AAConn | data.frame | 20 × 33 | 3 packages |
| AAConst | data.frame | 20 × 23 | 3 packages |
| AADescAll | data.frame | 20 × 1,171 | 3 packages |
| AAEdgeAdj | data.frame | 20 × 97 | 3 packages |
| AAEigIdx | data.frame | 20 × 44 | 3 packages |
| AAFGC | data.frame | 20 × 5 | 3 packages |
| AAGETAWAY | data.frame | 20 × 194 | 3 packages |
| AAGeom | data.frame | 20 × 41 | 3 packages |
| AAInfo | data.frame | 20 × 47 | 3 packages |
| AAMOE2D | data.frame | 20 × 148 | 3 packages |
| AAMOE3D | data.frame | 20 × 143 | 3 packages |
| AAMetaInfo | data.frame | 20 × 6 | 3 packages |
| AAMolProp | data.frame | 20 × 12 | 3 packages |
| AAPAM120 | matrix | 20 × 20 | 3 packages |
| AAPAM250 | matrix | 20 × 20 | 3 packages |
| AAPAM30 | matrix | 20 × 20 | 3 packages |
| AAPAM40 | matrix | 20 × 20 | 3 packages |
| AAPAM70 | matrix | 20 × 20 | 3 packages |
| AARDF | data.frame | 20 × 82 | 3 packages |
| AARandic | data.frame | 20 × 41 | 3 packages |
| AATopo | data.frame | 20 × 78 | 3 packages |
| AATopoChg | data.frame | 20 × 15 | 3 packages |
| AAWHIM | data.frame | 20 × 99 | 3 packages |
| AAWalk | data.frame | 20 × 40 | 3 packages |
| AAindex | data.frame | 544 × 26 | 3 packages |
Topics
Depended on by (1)
Bioconductor (1)
People
- Nan Xiao author maintainer
- Dong-Sheng Cao author
- Qing-Song Xu author
Cite
Cite this package
Run in R for the authors' entry:
citation("Rcpi")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/bioinformatics/btu624.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.