RUVSeq
Bioc currentRemove Unwanted Variation from RNA-Seq Data
Release Lineage
Entered 3.0 · Oct 14, 2014
Current · Requires R 4.6
Description
This package implements the remove unwanted variation (RUV) methods of Risso et al. (2014) for the normalization of RNA-Seq read counts between samples.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
3 1 exported
Complexity
3 avg / 6 max
Call network
3 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,391
Files
27
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
1
Internal functions
2
Testing & CI
Has tests
Yes
Test-to-code ratio
0.45
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
20%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
24
First release
2014-10-13
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 0%
- References docs
- 83%
Topics
Depended on by (9)
Bioconductor (9)
People
- Davide Risso author maintainer cph
- Sandrine Dudoit author
- Lorena Pantano contributor
- Kamil Slowikowski contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("RUVSeq")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.