RUVSeq
Bioc currentRemove Unwanted Variation from RNA-Seq Data
Release Lineage
Entered 3.0 · Oct 14, 2014
Current · Requires R 4.6
Description
This package implements the remove unwanted variation (RUV) methods of Risso et al. (2014) for the normalization of RNA-Seq read counts between samples.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
3 1 exported
Complexity
3 avg / 6 max
Call network
3 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,391
Files
21
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
1
Internal functions
2
Testing
Has tests
Yes
Test-to-code ratio
0.45
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
20%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
24
First release
2014-10-13
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 6includes a package overview page
- Examples that run
- 100%5 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 0%
- Help pages citing references
- 83%
Repository practices
2 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/drisso/ruvseq on 2026-10-21.
Topics
Depended on by (6)
Bioconductor (6)
People
- Davide Risso author maintainer copyright holder
- Sandrine Dudoit author
- Lorena Pantano contributor
- Kamil Slowikowski contributor
Cite
Cite this package
Run in R for the authors' entry:
citation("RUVSeq")The package provides a citation file, so citation() returns the authors' own entry.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.