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Topic: BSgenome or Microarray or Alignment

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45 packages on Bioconductor tagged BSgenome or Microarray or Alignment, most distinct IPs first

BSgenome, Microarray and Alignment in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202630,33728
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
ReportingTools
Tools for making reports in various formatsJason A. Hackney		Jason A. Hackneysoftware28 Apr 20261,637157
R4RNA
An R package for RNA visualization and analysisDaniel Lai		Daniel Laisoftware28 Apr 20261,35215
RnBeads
RnBeadsFabian Mueller		Fabian Muellersoftware28 Apr 20261,302170
Rbowtie
R bowtie wrapperMichael Stadler		Michael Stadlersoftware28 Apr 20261,2111
RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore		Francesco Del Carratoresoftware28 Apr 20261,1426
recoup
An R package for the creation of complex genomic profile plotsPanagiotis Moulos		Panagiotis Moulossoftware28 Apr 20261,098119
ROntoTools
R Onto-Tools suiteSorin Draghici		Sorin Draghicisoftware28 Apr 20261,03333
RTopper
This package is designed to perform Gene Set Analysis across multiple genomic platformsLuigi Marchionni		Luigi Marchionnisoftware28 Apr 20261,00318
RPA
RPA: Robust Probabilistic Averaging for probe-level analysisLeo Lahti		Leo Lahtisoftware28 Apr 202695192
ROTS
Reproducibility-Optimized Test StatisticTomi Suomi		Tomi Suomisoftware28 Apr 202693035
Rbowtie2
An R Wrapper for Bowtie2 and AdapterRemovalZheng Wei		Zheng Weisoftware28 Apr 202691230
recountmethylation
Access and analyze public DNA methylation array data compilationsSean K Maden		Sean K Madensoftware28 Apr 2026881152
rain
Rhythmicity Analysis Incorporating Non-parametric MethodsPaul F. Thaben		Paul F. Thabensoftware28 Apr 202687917
Rnits
R Normalization and Inference of Time Series dataDipen P. Sangurdekar		Dipen P. Sangurdekarsoftware28 Apr 202687543
Rhisat2
R Wrapper for HISAT2 AlignerCharlotte Soneson		Charlotte Sonesonsoftware30 Jul 2026864101
Rmagpie
MicroArray Gene-expression-based Program In Error rate estimationCamille Maumet		Camille Maumetsoftware28 Apr 202685519
REMP
Repetitive Element Methylation PredictionYinan Zheng		Yinan Zhengsoftware28 Apr 2026841198
rbsurv
Robust likelihood-based survival modeling with microarray dataSoo-heang Eo		Soo-heang Eosoftware28 Apr 202683213
regsplice
L1-regularization based methods for detection of differential splicingLukas M. Weber		Lukas M. Webersoftware16 Jul 202679340
RDRToolbox
A package for nonlinear dimension reduction with Isomap and LLE.Christoph Bartenhagen		Christoph Bartenhagensoftware28 Apr 202678235
RiboProfiling
Ribosome Profiling Data Analysis: from BAM to Data Representation and InterpretationA. Popa		A. Popasoftwareno date on record762
RBM
RBM: a R package for microarray and RNA-Seq data analysisDongmei Li		Dongmei Lisoftware28 Apr 20267368
rprimer
Design Degenerate Oligos from a Multiple DNA Sequence AlignmentSofia Persson		Sofia Perssonsoftware28 Apr 202673176
RiboDiPA
Differential pattern analysis for Ribo-seq dataJi-Ping Wang		Ji-Ping Wangsoftware28 Apr 2026723146
RegEnrich
Gene regulator enrichment analysisWeiyang Tao		Weiyang Taosoftware21 Oct 2026721148
ramr
Detection of Rare Aberrantly Methylated Regions in Array and NGS DataOleksii Nikolaienko		Oleksii Nikolaienkosoftware17 Sep 202671813
raer
RNA editing tools in RKent Riemondy		Kent Riemondysoftware28 Apr 202671379
RLMM
A Genotype Calling Algorithm for Affymetrix SNP ArraysNusrat Rabbee		Nusrat Rabbeesoftware28 Apr 20267126