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RiboProfiling

Bioc current

Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation

v1.42.0 · software · GPL-3
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Release Lineage

Entered 3.2 · Oct 14, 2015

Current · Requires R 4.6

1.0 In 22 of 49 releases 3.23

Description

Starting with a BAM file, this package provides the necessary functions for quality assessment, read start position recalibration, the counting of reads on CDS, 3'UTR, and 5'UTR, plotting of count data: pairs, log fold-change, codon frequency and coverage assessment, principal component analysis on codon coverage.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Technology › Sequencing › RiboSeq
Software › Technology › Sequencing
Software › BiologicalQuestion › Coverage
Software › WorkflowStep › Alignment
Software › WorkflowStep › QualityControl
Software
Software › StatisticalMethod › PrincipalComponent

People

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