ROntoTools
Bioc currentR Onto-Tools suite
Release Lineage
Entered 2.12 · Apr 4, 2013
Current · Requires R 4.6
Description
Suite of tools for functional analysis.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
38 12 exported
Complexity
3.4 avg / 12 max
Call network
38 nodes / 26 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,914
Files
54
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
13
Internal functions
25
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
CC BY-NC-ND 4.0 + file LICENSE
License flags
not SPDX, not OSI
History
Versions
27
First release
2013-04-03
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
100%
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 25 (2 internal)
- Examples that run
- 100%17 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 95%
- Return-value docs
- 85%
- Help pages citing references
- 16%
- ROntoTools PDF
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| allPathwayInfo | list | 150 elements | No other package |
| dbInfo | vector | 1 element | No other package |
| pathwayGraphs | list | 149 elements | 2 packages |
| top | data.frame | 8,468 × 4 | No other package |
Topics
Depended on by (2)
Bioconductor (2)
Suggested by (1)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("ROntoTools")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.