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Bioc current

R Normalization and Inference of Time Series data

v1.46.0 · software · GPL-3

Release Lineage

Entered 3.0 · Oct 14, 2014

Current · Requires R 4.6

1.0 In 24 of 49 releases 3.23

Description

R/Bioconductor package for normalization, curve registration and inference in time course gene expression data.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

10 1 exported

Complexity

10.5 avg / 76 max

Call network

10 nodes / 7 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

3,133

Files

43

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,667 (53.2%)Docs 632 (20.2%)Vignettes 834 (26.6%)

API

Exported functions

13

Internal functions

9

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.6.0

System requirements

C++ standard

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

24

First release

2014-10-13

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

0

LOC over versions

v3.0: 3,106 LOCv3.1: 3,106 LOCv3.2: 3,106 LOCv3.3: 3,106 LOCv3.4: 3,106 LOCv3.5: 3,106 LOCv3.6: 3,106 LOCv3.7: 3,128 LOCv3.8: 3,128 LOCv3.9: 3,133 LOCv3.10: 3,133 LOCv3.11: 3,133 LOCv3.12: 3,133 LOCv3.13: 3,133 LOCv3.14: 3,133 LOCv3.15: 3,133 LOCv3.16: 3,133 LOCv3.17: 3,133 LOCv3.18: 3,133 LOCv3.19: 3,133 LOCv3.20: 3,133 LOCv3.21: 3,133 LOCv3.22: 3,133 LOCv3.23: 3,133 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 17 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
100%
Return-value docs
85%
References docs
0%

Topics

People

Dipen P. Sangurdekar

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