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Topic: MassSpectrometry or DNAMethylation

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82 packages on Bioconductor tagged MassSpectrometry or DNAMethylation, most distinct IPs first

MassSpectrometry and DNAMethylation in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann		Steffen Neumannsoftware28 Apr 20265,63915
MSnbase
Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto		Laurent Gattosoftware9 Aug 20265,521134
MsCoreUtils
Core Utils for Mass Spectrometry DataRforMassSpectrometry Package Maintainer		RforMassSpectrometry Package Maintainersoftware28 Apr 20265,02413
mzID
An mzIdentML parser for RLaurent Gatto		Laurent Gattosoftware28 Apr 20264,53211
minfi
Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20264,041143
MetaboCoreUtils
Core Utils for Metabolomics DataJohannes Rainer		Johannes Rainersoftware30 Apr 20263,94024
MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno		Sergio Oller Morenosoftware7 Jul 20263,0960
methylumi
Handle Illumina methylation dataSean Davis		Sean Davissoftware16 Aug 20262,825158
MsFeatures
Functionality for Mass Spectrometry FeaturesJohannes Rainer		Johannes Rainersoftware28 Apr 20262,50531
MsExperiment
Infrastructure for Mass Spectrometry ExperimentsLaurent Gatto		Laurent Gattosoftware28 Apr 20262,287112
missMethyl
Analysing Illumina HumanMethylation BeadChip DataBelinda Phipson		Belinda Phipsonsoftware12 May 20261,987169
methylKit
DNA methylation analysis from high-throughput bisulfite sequencing resultsAltuna Akalin		Altuna Akalinsoftware28 Apr 20261,83399
MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics ExperimentsMeena Choi		Meena Choisoftware28 Apr 20261,586100
MsBackendMgf
Mass Spectrometry Data Backend for Mascot Generic Format (mgf) FilesRforMassSpectrometry Package Maintainer		RforMassSpectrometry Package Maintainersoftware26 Jul 20261,34031
MSnID
Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics IdentificationsVlad Petyuk		Vlad Petyuksoftware28 Apr 20261,236169
MSstatsConvert
Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats FormatAnthony Wu		Anthony Wusoftware19 Jul 20261,19410
MethPed
A DNA methylation classifier tool for the identification of pediatric brain tumor subtypesHelena Carén		Helena Carénsoftware28 Apr 20261,1599
methylMnM
detect different methylation level (DMR)Yan Zhou		Yan Zhousoftware28 Apr 20261,13511
MethylAid
Visual and interactive quality control of large Illumina DNA Methylation array data setsL.J.Sinke		L.J.Sinkesoftware28 Apr 20261,100169
MethylSeekR
Segmentation of Bis-seq dataLukas Burger		Lukas Burgersoftware28 Apr 20261,09383
MEDIPS
DNA IP-seq data analysisLukas Chavez		Lukas Chavezsoftware28 Apr 20261,093102
MoonlightR
Identify oncogenes and tumor suppressor genes from omics dataMatteo Tiberti		Matteo Tibertisoftware28 Apr 20261,048186
MSstatsTMT
Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labelingDevon Kohler		Devon Kohlersoftware28 Apr 20261,044103
metaMS
MS-based metabolomics annotation pipelineYann Guitton		Yann Guittonsoftware28 Apr 20261,016160
methylPipe
Base resolution DNA methylation data analysisMattia Furlan		Mattia Furlansoftware28 Apr 20261,007158
MEAL
Perform methylation analysisXavier Escribà Montagut		Xavier Escribà Montagutsoftware28 Apr 20261,002229
MethylMix
MethylMix: Identifying methylation driven cancer genesOlivier Gevaert		Olivier Gevaertsoftware28 Apr 202699540
msqrob2
Robust statistical inference for quantitative LC-MS proteomicsLieven Clement		Lieven Clementsoftware28 Apr 2026992122
methylCC
Estimate the cell composition of whole blood in DNA methylation samplesStephanie C. Hicks		Stephanie C. Hickssoftware28 Apr 2026973157
MetNet
Inferring metabolic networks from untargeted high-resolution mass spectrometry dataThomas Naake		Thomas Naakesoftware28 Apr 202696477