methylPipe

Bioc current

Base resolution DNA methylation data analysis

v1.46.0 · software · GPL(>=2)

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Release Lineage

Entered 3.0 · Oct 14, 2014

Current · Requires R 4.6

1.0 In 24 of 49 releases 3.23

Description

Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.

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Topics

Software › Technology › Sequencing › MethylSeq

Software › AssayDomain › DNAMethylation

Software › BiologicalQuestion › Coverage

Software › Technology › Sequencing

Depended on by (2)

Bioconductor (2)

compEpiTools ListerEtAlBSseq

People

Mattia Furlan contributor maintainer
Kamal Kishore author
Mattia Pelizzola author

At a glance

Version: 1.46.0
Category: software
License: GPL(>=2)
Requires R: ≥ 4.6
Maintainer: Mattia Furlan
Entered: 3.0 · Oct 14, 2014
Current: 3.23 · Apr 29, 2026

Available on

CRAN r2u Bioconductor autoCRAN COPR

Dependencies

Depends

R (>= 3.5.0)methodsgrDevicesgraphicsstatsutilsGenomicRangesBiocSummarizedExperiment (>= 0.2.0)BiocRsamtoolsBioc

Imports

marrayBiocgplotsIRangesBiocBiocGenericsBiocGvizBiocGenomicAlignmentsBiocBiostringsBiocparalleldata.tableSeqinfoBiocS4VectorsBioc

Suggests

BSgenome.Hsapiens.UCSC.hg18BiocTxDb.Hsapiens.UCSC.hg18.knownGeneBiocknitrMethylSeekRBioc

Source & history

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