metaMS
Bioc currentMS-based metabolomics annotation pipeline
Release Lineage
Entered 2.14 · Apr 14, 2014
Current · Requires R 4.6
Description
MS-based metabolomics data processing and compound annotation pipeline.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
41 29 exported
Complexity
5.9 avg / 22 max
Call network
41 nodes / 50 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,292
Files
91
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
31
Internal functions
12
Testing & CI
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
33.3%
Unsafe pattern score
2
Dep constraint coverage
10%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
25
First release
2014-04-11
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 93%
- Documented parameters
- 93%
- Return-value docs
- 92%
- References docs
- 14%
Topics
Depended on by (1)
Bioconductor (1)
People
- Yann Guitton contributor maintainer
- Elisabete Carvalho contributor
- Pietro Franceschi author
- Julien Saint-Vanne contributor
- Matthias Scholz contributor
- Nir Shahaf contributor
- Ron Wehrens author
- Georg Weingart contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("metaMS")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.