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Topic: MassSpectrometry or Sequencing or Proteomics

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65 packages on Bioconductor tagged MassSpectrometry or Sequencing or Proteomics, most distinct IPs first

MassSpectrometry, Sequencing and Proteomics in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
GenomicRanges
Representation and manipulation of genomic intervalsHervé Pagès		Hervé Pagèssoftware28 Apr 202656,97410
GenomicAlignments
Representation and manipulation of short genomic alignmentsHervé Pagès		Hervé Pagèssoftware28 Apr 202627,00641
GenomicFeatures
Query the gene models of a given organism/assemblyH. Pagès		H. Pagèssoftware28 Apr 202619,21874
GSVA
Gene Set Variation Analysis for Microarray and RNA-Seq DataRobert Castelo		Robert Castelosoftware25 Oct 202612,75897
glmGamPoi
Fit a Gamma-Poisson Generalized Linear ModelConstantin Ahlmann-Eltze		Constantin Ahlmann-Eltzesoftware28 Apr 20267,00046
Gviz
Plotting data and annotation information along genomic coordinatesRobert Ivanek		Robert Ivaneksoftware28 Apr 20264,687150
goseq
Gene Ontology analyser for RNA-seq and other length biased dataFederico Marini		Federico Marinisoftware28 Apr 20262,404104
GreyListChIP
Grey Lists -- Mask Artefact Regions Based on ChIP InputsMatt Eldridge		Matt Eldridgesoftware28 Apr 20261,94259
gage
Generally Applicable Gene-set Enrichment for Pathway AnalysisWeijun Luo		Weijun Luosoftware28 Apr 20261,92944
Glimma
Interactive visualizations for gene expression analysisShian Su		Shian Susoftware18 Jun 20261,87080
GenomicDataCommons
NIH / NCI Genomic Data Commons AccessSean Davis		Sean Davissoftware28 Apr 20261,83751
genomation
Summary, annotation and visualization of genomic dataAltuna Akalin		Altuna Akalinsoftware28 Apr 20261,81599
GenomicFiles
Distributed computing by file or by rangeBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20261,76380
GenomicScores
Infrastructure to work with genomewide position-specific scoresRobert Castelo		Robert Castelosoftware28 Apr 20261,48483
GenomicInteractions
Utilities for handling genomic interaction dataLiz Ing-Simmons		Liz Ing-Simmonssoftware28 Apr 20261,436153
GUIDEseq
GUIDE-seq and PEtag-seq analysis pipelineLihua Julie Zhu		Lihua Julie Zhusoftware28 Apr 20261,256179
GeneMeta
MetaAnalysis for High Throughput ExperimentsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20261,23853
GeneNetworkBuilder
GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression DataJianhong Ou		Jianhong Ousoftware28 Apr 20261,21669
GenVisR
Genomic Visualizations in RZachary Skidmore		Zachary Skidmoresoftware28 Apr 20261,200113
gCrisprTools
Suite of Functions for Pooled Crispr Screen QC and AnalysisRussell Bainer		Russell Bainersoftware28 Apr 20261,17481
GOTHiC
Binomial test for Hi-C data analysisBorbala Mifsud		Borbala Mifsudsoftware28 Apr 20261,16186
groHMM
GRO-seq Analysis PipelineTulip Nandu		Tulip Nandusoftware28 Apr 20261,14958
GDCRNATools
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDCRuidong Li		Ruidong Lisoftware28 Apr 20261,097235
gcapc
GC Aware Peak CallerMingxiang Teng		Mingxiang Tengsoftware28 Apr 20261,04860
GOexpress
Visualise microarray and RNAseq data using gene ontology annotationsKevin Rue-Albrecht		Kevin Rue-Albrechtsoftware28 Apr 20261,04579
GRaNIE
GRaNIE: Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq dataChristian Arnold		Christian Arnoldsoftware28 Apr 20261,025151
Guitar
GuitarJia Meng		Jia Mengsoftware28 Apr 20261,02095
GeomxTools
NanoString GeoMx ToolsMaddy Griswold		Maddy Griswoldsoftware28 Apr 20261,009123
GeneBreak
Gene Break DetectionEvert van den Broek		Evert van den Broeksoftware28 Apr 202697149
gtrellis
Genome Level Trellis LayoutZuguang Gu		Zuguang Gusoftware28 Apr 202696720